Detailed information on CNT0000340 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000340

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MCTKDSSLTFGLVFFVVSFRNFLLFLGIEVPIICQKPRKYQSKRLTKEQHSKTKPN*

Sequence

>CNT0000340
CATCAACAATAATGGGGTGACTAGATATTTAACTTGCTTCATGAAAGCTTCCTGAAAATTTCCACTATCCTCTGTGTTTGCATTCGAGTTATCTGAAGTT
AAAAGGAGAATCCAGTCATCAAAAGTTGTTAGTGGTACCCCTTTTGATTAACTGGAATGCAGGCATATGATTAATTCTTGAAAAACAACCATACAGATCC
ACAAGTAAATAATTGCAGCCCACAGAAAGAGAGAGAGAGAGTATTTTGGGGTTGGAACTTAAGTTTCAAAACCCAAAATGCCCCATCCACAGTAAAGTTG
TAATTGAAGTTTGAACTCAACAGAAAATAAAACCTTGGATGTGGGCAAGAAGAACTGATTACTACCAGATTCTCCATCTTCCCATCATAAAGGAAGTTCT
GGCATTAAGTTAAATGCAATAAAAAATAGCTCAACACTAAAAAAAATATAATCTAACAGAAGACAAGCAAACCAACTCAACAAGTTACAAAACAATAGAA
AATCGTAGCAAGTAATGACTAACAAAACCTCCCTCGAGCATATACAAAGCAAAACACACAAAACTAGTTAGTCAATTGTTATGCACAGCACTTGAACAAC
ATATAAATTACAAGAAAGACATCCCTCCAGTTTACTCATTACACCAGTAGTCACCACCATGTTCCAACAATTTGCCATGATAGCTTCCTAATTCAGACGA
CAATAGGATGTGCACAAAAGATTCTTCTTTAACCTTTGGACTCGTATTTTTTGTCGTTTCCTTTCGGAACTTCCTTCTTTTCCTTGGGATAGAAGTTCCC
ATAATCTGCCAAAAACCGAGAAAATACCAATCAAAACGCTTAACTAAAGAGCAGCACAGCAAGACAAAACCAAATTAAAACAAAGCAGCTTCA

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G14640.2 Uncharacterized protein protein coding CNT0000340 309 248 CDS Trans
GLYMA11G14640.2 Uncharacterized protein protein coding CNT0000340 705 407 CDS Trans
GLYMA12G06530.1 Uncharacterized protein protein coding CNT0000340 818 344 CDS Trans
GLYMA12G06530.1 Uncharacterized protein protein coding CNT0000340 1080 410 CDS Trans
GLYMA12G06580.2 Uncharacterized protein protein coding CNT0000340 932 342 CDS Cis
GLYMA12G06580.2 Uncharacterized protein protein coding CNT0000340 1122 410 CDS Cis
GLYMA12G06593.1 Uncharacterized protein protein coding CNT0000340 1283 529 CDS Trans
GLYMA12G25485.1 Uncharacterized protein protein coding CNT0000340 463 270 CDS Trans