Detailed information on CNT0000347 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q38900|CP19A_ARATH, E-value = 2e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000347

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)260.085278.449253.266855.467126.38682.36120.235103.979482.991645.211507.591468.214654.907793.651510.135leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)050100150200250300350400450500550600650700750800850900

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MISITPQSPKRHGKEKKKAKTTPKETTHSEPPTQR*

>peptide 2 (33 aa)
MGKRKKRQKRHRKKRHIQSHRHRDKSLGSTSSI*

>peptide 3 (65 aa)
NVYKKNNRRLKRITRRIIEVLIFIEGSSSYFFMFLITDSIHSMNEPHDTDILERKGRIQRGRVSK*

Sequence

>CNT0000347
TAAACGTATATAAAAAAAATAATCGAAGATTAAAGAGAATTACTAGGCGAATAATAGAGGTCCTAATTTTTATTGAAGGTAGCTCATCATATTTTTTTAT
GTTTCTCATAACAGACTCCATTCACTCTATGAACGAACCACATGATACTGATATTTTAGAAAGGAAAGGAAGGATTCAAAGGGGAAGGGTTTCGAAATGA
TATCCATAACACCGCAATCCCCTAAACGACATGGGAAAGAGAAAAAAAAGGCAAAAACGACACCGAAAGAAACGACACATTCAGAGCCACCGACACAGAG
ATAAAAGCCTAGGGTCAACGTCGTCTATCTAAGAGAGTTGACCACAGTCGGCGACGACGACAGGCTTGGCGGTCCTGCCGGAGCTGGATCCGACCTTCTC
TATCTCCTTGACGACGT