Detailed information on CNT0000352 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZW06|PUM2_ARATH, E-value = 1e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000352

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRLPMFQHMLLSRREETKSKRSSHMYSKQFHI*

>peptide 2 (34 aa)
MQAKGKDIHILLSINKFAAKKNFNIKESNFKKHC*

>peptide 3 (35 aa)
MLTAPKISSITFCCVVGSLQCSSTRCRVERILYDK*

Sequence

>CNT0000352
CTCATTTGCACTATCTTGTCTGCTAATTCCTTTATTATAGAAGAACGCTCATGAGGCTTCCCATGTTCCAGCACATGCTGTTATCAAGGAGAGAAGAAAC
CAAAAGCAAGAGATCAAGCCACATGTACAGCAAACAATTTCACATTTAGGAGGTAAAGGATATTAGGGAAGTAGAGAGTTGGGACCAAAAGCCTGTATCA
CATGTGAGAGAGAACCAACCTTGGATGGCATGTTAAAAGCAAAAAGCAAATAGGGCAAGAGGCTATAATAACAGTTTATTAAAAATAAAGAATTATAAAT
ACTAACAATTGTCACTTAAGCATTACATGTATTCCAAAGACATTAACAATAAATTCAGTTGAAAATCATAAACAAGAAAAGTAAGTTTCTAGTTGAAAGG
TTTCATGATATCAGGTATTGATAAGGACATTACATCTAAAGATTAGATGCAGGCCAAAGGAAAAGACATTCATATTTTATTGTCAATTAACAAATTTGCA
GCAAAAAAAAACTTCAATATAAAGGAGAGTAACTTCAAAAAACATTGCTAGCAGGCTTGCAGCTGCAGAAAATCCTTCTGAAGTAAAACAAAAAAATGTG
AGAACCATAAAAGCATGCTTCCAGCTCTATGACAATAAGAAAGAAGCCCAAATAATGCAGTCAGAAAAAATTATAAACCTGAACAACGTAGTTGCCATAC
TGATCCTGAGCTAACATGCTAACTGCTCCTAAAATTTCATCCATAACTTTCTGTTGTGTTGTAGGGTCTTTGCAGTGTTCCAGCACTCGCTGTCGCGTAG
AACGTATTTTATATGACAAATGATCTAAGGTACATTATAAGAGTAACATAAGCAGTGAAGAGAACTTACCTGTATCACCCGGCAACCATATGGATGGGTT
GAGAGTGTCACAACTTGATCAAAAAAT

lncRNA-RNA interactions

Number of interactions: 21

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G14500.1 Uncharacterized protein protein coding CNT0000352 607 376 CDS Trans
GLYMA11G14500.1 Uncharacterized protein protein coding CNT0000352 593 326 CDS Trans
GLYMA11G14530.1 Uncharacterized protein protein coding CNT0000352 599 371 CDS Trans
GLYMA11G14530.1 Uncharacterized protein protein coding CNT0000352 441 326 CDS Trans
GLYMA11G14550.3 Uncharacterized protein protein coding CNT0000352 590 294 CDS Trans
GLYMA11G14550.3 Uncharacterized protein protein coding CNT0000352 536 289 CDS Trans
GLYMA11G14550.4 Uncharacterized protein protein coding CNT0000352 590 294 CDS Trans
GLYMA11G14550.4 Uncharacterized protein protein coding CNT0000352 536 289 CDS Trans
GLYMA11G14550.5 Uncharacterized protein protein coding CNT0000352 590 294 CDS Trans
GLYMA11G14550.5 Uncharacterized protein protein coding CNT0000352 536 289 CDS Trans
GLYMA12G06430.1 Uncharacterized protein protein coding CNT0000352 828 365 CDS Trans
GLYMA12G06430.1 Uncharacterized protein protein coding CNT0000352 391 237 CDS Trans
GLYMA12G06450.3 Uncharacterized protein protein coding CNT0000352 1356 499 CDS Cis
GLYMA12G06450.3 Uncharacterized protein protein coding CNT0000352 894 327 CDS Cis
GLYMA12G06450.4 Uncharacterized protein protein coding CNT0000352 1356 499 CDS Cis
GLYMA12G06450.4 Uncharacterized protein protein coding CNT0000352 894 327 CDS Cis
GLYMA12G06450.5 Uncharacterized protein protein coding CNT0000352 1356 499 CDS Cis
GLYMA12G06450.5 Uncharacterized protein protein coding CNT0000352 894 327 CDS Cis
GLYMA15G04060.1 Uncharacterized protein protein coding CNT0000352 391 252 CDS Trans
GLYMA15G04060.2 Uncharacterized protein protein coding CNT0000352 391 252 CDS Trans
GLYMA15G04060.3 Uncharacterized protein protein coding CNT0000352 391 252 CDS Trans