Detailed information on CNT0000355 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2PMR7|PSBE_SOYBN, E-value = 1e-50

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0040364 in

Most similar lncRNAs:
CNT0040364, E-value = 0.0 ()

Expression of CNT0000355

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MNNPVSDTGNNISKRTFSCASRHVELHIFLYSQKGDRFHKISK*

>peptide 2 (50 aa)
HSFFDEFEWIPGELLRFHFKKKTNSNTITTEMSPIRNMNHKRKYQLNRSQ*

>peptide 3 (32 aa)
STLSLTNSSGSQVSYYAFISKKKQILTRLLQR*

>peptide 4 (30 aa)
MLNSTYSCTVKRGIDSIKSVSRNLLKCNPC*

Sequence

>CNT0000355
TCCACTCTTTCTTTGACGAATTCGAGTGGATCCCAGGTGAGTTATTACGCTTTCATTTCAAAAAAAAAACAAATTCTAACACGATTACTACAGAGATGAG
CCCAATCCGGAATATGAACCATAAAAGAAAATACCAATTAAACCGATCACAGTAATACCAGTTACAGTACCTATTATCCAAAGAGGAATCCTTCCAGTAG
TATCGGCCATTTATCCCACTTTCCTCCACATTTAATCAAGTAGTCAGTCATGCTAAAGACATAAACAGTCATAGATAATTATGAAACGATATCCTTCCGA
ATGGGATAAAATAATTCCTTATATATTATTTACTATTCCTATTTCTTCTATTAATTGAAGAAATAATTTGAAAATAAAACAGCAAGTACAAAAATGAGTA
ATAACCCCCAGTAGAGACTGGTACGATTCAATTCAACATTTTGTTCATTTGGGTTTGATTGTGTCGTAGCTCTATAATTCAAATTAGGTTTATCGTTGGA
TGAACTGCATTGCTGATATTGATCCCAAAAAAGAAACAGTGGGTACCGCTAGTCCGTGAACAGCCAACCATCGTACTGTAAAAATTGGATAGGTCCTATC
TATGGTCATTGGAGCCTCCTAAAAAGATCTACTAAATTCATCAAGTTGTTCCAAAGGATCAAAACGGCCAGTTATTAATGGAATTCCTTGTCGGCTCTCT
GTAAAATATTCGTTTGGGCGGGGGCTTCCAAAAACATCGTAAGCTAGACCCGTGCTGACAAATAACCAACCTGCAATGAATAGGGAGGGTATAGTAATGC
TATGAATAATCCAGTATCGGATACTGGTAATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGTTGAACTCCACATATTCTTGTACAGTCAA
AAGGGGGATCGATTCCATAAAATCAGTAAGTAGAAATTTACTGAAATGTAATCCTTGTTAGATCGTCCATTTTGTACCAACGGTGTCTTTTGAGTATACC
GAATCAGTATAGCTATCCTTCTTCTAACAGAGCAATGAAATTTCACAATCGAAATCTAGGACTAGATAAGTTCTTTCTTCTTTCTTCATTGATTGTCTCG
ATGTATTCAAAAATCCGATAGAAAATTTTTGGATAGTACATTTTTATAGTAATAGTATAAAATGAAGGTTCTTCACATTTCACATTATTAGTTTCGGACT
AAAAACTAAGTATCAATTAAAATCGGAATATGGTAAATTGGTTTCTTAGAATTCATAAAGGAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G36132.1 Cytochrome b559 subunit alpha protein coding CNT0000355 1438 520 CDS_UTR Cis