Detailed information on CNT0000357 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8BP78|F10C1_MOUSE, E-value = 3e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000357

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.9814.0944.0848.5013.93914.4059.4527.58213.80320.36321.01318.99512.88815.3312.395leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVTKWFLTKLFTLLYPSKLCPFMQTITVQHAS*

>peptide 2 (127 aa)
MASFGSLKSTIFEKEERKQQYQSHIRGLNAYDRHKKFMDDYVKFYGKERPSNLKLPIKTDQDTLREGYRFIRSEEDDMNPSWEQRLVKRYYDKLFKEYCL
ADMSQYKSGKVEDREGSHIWQGPVNMW*

Sequence

>CNT0000357
GGGTTTGAGTTGAACAGAGAACAAGTGGCGAACCCAGTTTGAGCGCTATTTTTGTTTGTGTTCCCAGCGAAAGGGCAAAACAAAGTATAAGACCTTGCTT
TGATTTGCTTCCCTTTTCTTGTTGTCGTGTCAACCATGGCGTCGTTTGGGTCTCTGAAATCCACCATTTTCGAAAAAGAAGAGAGAAAACAGCAGTATCA
GTCGCATATTCGAGGCCTCAATGCATACGACCGTCACAAAAAATTCATGGACGATTACGTTAAATTTTATGGAAAAGAAAGACCGTCAAACCTAAAGTTG
CCTATTAAAACAGATCAAGATACACTAAGAGAAGGATACAGATTCATCCGGTCAGAGGAAGATGATATGAATCCATCTTGGGAACAAAGGCTGGTGAAGC
GTTATTATGACAAGCTTTTTAAGGAATACTGCCTAGCTGACATGTCACAGTACAAGAGTGGTAAGGTGGAGGACAGAGAAGGAAGTCATATCTGGCAAGG
GCCAGTTAATATGTGGTAACAAGCATTGCAATGAGAAAGATGGGTTAGCAAGCTATGAGGTGAACTTTTGTTACTTTGAAGCTGGAGAAAACAAACAAGC
CCTAGTTAAATTGGTAACATGTGAGAGGTGTGCATTCAAACTCAACTACAAGAGGCAAAAAGAAAAGGAGCTGTTAGAAAAAAGACAAGAAGAACAGGAT
AGACGAAAGAGGAATCGTTCAAAGAGTGATGATGATCTAGATGACTTCCAAGAAAGCAAAGAGAGAAGGCGGAAAGGGAAAAAGGCTTTGACTTCAGCCA
GTGATCATAAAATTGATGACGATGATGATAACTTAGATGAGTTTCTTGACGGGATGTTTCTGTGATCTTGGCTGATTTGATTGCCATACCTGAAAAGTGC
TTCCAGGCGCCAAAGCTGGGCAAATAGAAACGGTTAGGCAGTGGTGGAGACAAGTGGGTGATCTGTAGGTAGATGTCTAAAATATAGGAAACATGGTGAC
CAAATGGTTCTTGACAAAATTATTCACCCTGTTGTATCCTTCAAAATTATGTCCATTTATGCAGACTATAACAGTTCAGCATGCTAGTTGAGTTTGTATT
ATGTACAGTTTGTATAGTCTTTTCATCTGCCAATAATGAAAATTGCGTAGCTGAATGAGCTGCTGCTTGATTATCATGAACTCGTTTTACCACATATTGC
GCGTAAAATCTTGTGGAAATTTT