Detailed information on CNT0000361 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000361

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLVIVCIRDFFGPFKQVARNLKSFYFCVLRKWKYSQTHIQI*

Sequence

>CNT0000361
CCGTTCCATAGCAGCACCAGAAAGAGTTAAATGGTGTTCCCCAACTATGGTAAGTTTTAGCCTTGGAAACCCCAAGACCTAGTGGAAGCATATAAATCAT
CACTCCAGGATCGGTCCCTCTTTGAATGCCGAGCACACCATTGGTCAAGGCATGCTAGTAATAGTCTGCATAAGAGACTTCTTTGGTCCATTTAAACAGG
TGGCGCGAAACCTGAAATCATTTTATTTTTGTGTGCTAAGAAAATGGAAATACTCGCAAACACATATACAGATATAAATCATGAACATGCAGTGATGAGT
TACCATGTGAAAAAAAGTTCTCTCTTTTGACAATTCAAATAACTATGAAAAATTTTCATATACACATTTTTAACTCCCTAGCATTACATGATGAACTAAT
AAAATGATGATTCTTCGTTCTCTGTCGTTTACAAG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G14020.1 Uncharacterized protein protein coding CNT0000361 729 411 CDS Trans
GLYMA11G14020.2 Uncharacterized protein protein coding CNT0000361 729 411 CDS Trans
GLYMA12G05980.1 Uncharacterized protein protein coding CNT0000361 573 239 CDS Trans