Detailed information on CNT0000366 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O04916|ACOC_SOLTU, E-value = 4e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000366

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.1240.09900.542000.11600.7281.5531.0561.4991.0961.360leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.7

Peptides detected in this lncRNA

>peptide 1 (42 aa)
ATMGFFPVDHVTLQYLKLTGRSDETVSTIYQTHLLYSDVKCL*

>peptide 2 (49 aa)
MNKVFILLDLAVLHVLAIQECWMSPLLLPSQKMVIFCNKLQLELKLDES*

>peptide 3 (62 aa)
MICFLAFEKVKTRSLLSMTHVPIFARLCSGDLNSSNDVKMSVWEIHVNDFVLGTLTSAMISG*

>peptide 4 (44 aa)
MSHNVYITCFLVLSFSIILSDFSSLFVKVIIYCTPYTSNITCTR*

Sequence

>CNT0000366
GTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACATTACAGTATCTCAAGTTAACGGGAAGAAGTGATGAGACTGTAAGTACCATATATCAAACTCA
TTTATTATATTCTGATGTGAAGTGCTTATAGATCTATTGATCTTCATTTTGTCAACTGTTCTGTTCCATTCACCTGTTCCATTCAACATCAGTTCTGTTC
CATTCACCTGTTCATTATATTTATCAACTTTTGCTGGCTTTCACTAGCTTGAGCACCAAGCTATTAGTGACCACTTATGCATGATATGTTTTCTGGCCTT
TGAAAAAGTCAAGACTCGTTCGCTCTTGTCTATGACTCATGTTCCTATTTTTGCAAGACTTTGTTCTGGGGACCTTAACAGCAGCAATGATGTCAAAATG
AGTGTTTGGGAGATCCATGTAAATGACTTTGTTCTGGGGACCTTAACATCAGCAATGATATCAGGATGAAGTCCTTATCTTCTGGTGTCTTTTTTTCGCT
TTGCATAATAAAATGAAAAGATTGTGTGTTTTTTGGATGGTTCTTTTCTTTTCTTGATTCTAACTGTTTACTGTTTTCACTGTTTTGCCAGGTCAAGCCT
TGGGTTAAAACAAGTCTTGCTCTAGGCTCTGGAGTTGTTACAAAATATCTACTCCAGAGGTTTTTTGTGCTTCTTATGCAGTAATTTGTATTATAATGTA
GTCACTTCCCCTCTGTACAAATTAGGGAAAATATATTCTAATTTTGTATTTGTTTCTGTTTTATTGCCAGTGGACTGCAAAAATATCTAAATGAACAAGG
TTTTCATATTGTTGGATTTGGCTGTACTACATGTATTGGCAATTCAGGAGTGCTGGATGAGTCCGTTGCTTCTGCCATCTCAGAAAATGGTCATATTTTG
TAACAAATTACAACTTGAACTGAAGCTGGATGAGTCATAATGTGTATATAACTTGTTTTTTGGTTCTTTCTTTTTCTATAATATTATCTGATTTTTCTTC
TCTCTTTGTAAAGGTCATTATTTATTGTACACCATACACAAGTAATATAACTTGTACAAGGTAGTTCGTGCCGATAGAGAAGCCCATAATAACAGCCTAA
AATATCAGGAGTGACACCTTTTTATACCATTATTAGAAAAATTAAAATGAGAGAAGGAATTTGAGAGGTTGGAATTCTGTTCTCTCAAGAGTGACTGAG