Detailed information on CNT0000372 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000372

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000004.1242.4210.60500.1350.440.32000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MALLIHLSPSVQGRIHRENTCRASGYDNT*

>peptide 2 (41 aa)
MSLIVCTSFSWLTKDLHIYLICLCGQACKGMFGFELGDLSF*

>peptide 3 (46 aa)
MASRLRATECKDWEWLENATVLCQRHSSTCYFLVPQQHVPVILHQI*

>peptide 4 (41 aa)
MARKCNSTVSTSLINMLLSGSPTTCSSDSSSNLDTQVFPIF*

>peptide 5 (54 aa)
MCPDNELALTQTIEEARSYILFVNGTIDPSQSISSRQNPQREHMQGIRVRQYIV*

Sequence

>CNT0000372
CGTGTGTCCGCTACGAGGTTGGAGCTTTCCCCAACCCTTTTCTCATTTTCTTCCATCAATTTGATTGATGTTATAGGTTGAAGGAAGGACATGGCATCTA
GGCTTAGAGCCACTGAATGTAAGGATTGGGAATGGCTAGAAAATGCAACAGTACTGTGTCAACGTCACTCATCAACATGTTACTTTCTGGTTCCCCAACA
ACATGTTCCAGTGATTCTTCATCAAATTTAGACACACAGGTATTTCCAATATTTTAGAGCTACCTAGAAGATCGATAGGAAGAGCAAAAACACAAGTCTT
GAAGAGAAAGAGGGGCAAGAAGTCAAAGTCCAGGTCATGGTTATTCTGTCTGTGCTCAAATAGTAATAGTGGTAGTAACCCTGATGCTGAGAACAATCCT
CCATCCCTTGGTCAATTTCTTGCACTAGAAAGAAGAGCTTCTAATGAAAATAGAAAGAACCAAATCATATCCCTCTTAATTATGTGCCCTGATAATGAGC
TTGCATTGACTCAAACCATTGAAGAAGCACGCTCATATATATTATTTGTGAATGGCACTATTGATCCATCTCAGTCCATCAGTTCAAGGCAGAATCCACA
GAGAGAACACATGCAGGGCATCAGGGTACGACAATACATAGTTTGACTCACTTGCTGATATATGTCTCTAATTGTGTGCACAAGTTTCTCGTGGTTAACT
AAAGATTTGCACATATATCTTATATGTTTGTGTGGACAAGCTTGTAAGGGCATGTTTGGTTTTGAGTTGGGAGATTTGAGCTTTTAATGTTTTCTTTTCA
ATATTCTCAGATCCTACAGAATCTCAGCTTCCCTGACTCTTGGCTAGTAATTCTTAACCCGGT