Detailed information on CNT0000375 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000375

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3690.2960.1510.8060.1761.3250.6910.810.5421.7330.4711.0290.4441.0111.635leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.9

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLCNWQLDYEEEPSTRSSTKKRKSSSKKSSKKLKENGERGE*

>peptide 2 (50 aa)
MLQNLRLSLLPSTTWEFFWHQRMTLGRTPLFSVWRSGHVMQLAVRLRRRA*

>peptide 3 (74 aa)
MTLEKKTEKRREERKKHTKLMRGFLQNGMLRDCNLISGLKVKEQGSISVKAKFESNVVTRPKVRAFCMPMVTCL*

>peptide 4 (35 aa)
MGNVENDSRKENRKKKRRKKKTYQVDARFLTKWNA*

Sequence

>CNT0000375
TTTTCTTTTTAATGCATTATAATGTTTTGGCAGTGCTTAAAAGTTAAAACTCAAAGCACTTCTTTTTGCCAATAACATGGTCTAAGTTTGTGATCATTAT
ATGCTTCAGAATCTTCGCCTGAGCCTTCTGCCGAGCACAACCTGGGAGTTCTTTTGGCACCAGAGAATGACATTGGGAAGAACTCCTTTATTTTCAGTAT
GGAGATCAGGACATGTTATGCAATTGGCAGTTAGATTACGAAGAAGAGCCTAGCACACGTTCTTCAACAAAGAAGAGAAAATCTTCGTCAAAAAAGTCAA
GTAAGAAGCTAAAGGAAAATGGGGAACGTGGAGAATGACTCTAGAAAAGAAAACAGAAAAAAGAAGAGAAGAAAGAAAAAAACATACCAAGTTGATGCGA
GGTTTCTTACAAAATGGAATGCTTAGGGATTGTAATTTGATCAGTGGTTTGAAAGTGAAGGAACAAGGCAGCATAAGCGTAAAAGCAAAATTTGAGTCCA
ATGTTGTCACACGACCCAAGGTGCGAGCTTTTTGCATGCCCATGGTAACGTGCCTTTAGTGTTTTTAAGATCAGGAATCATATACAATATTTTTTGAAAG
GGTTAATGGTGACTTTAGTCTCTTAAAACACTATTAATCCTTTATTAAGTTTATTTATATGTTGTCGTCTGTCCAATTTTGTTAAAGAAGTGAAGATACC
AACTCTAGAGACCAAAAACCAATGTAAAGAGAAATAGATGAGATTATGAAAGAAAATGAGTAAACAAGGGTATGCTAATGCCGTATTATTTTCCCCGTCA
TGAATG