Detailed information on CNT0000377 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000377

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.9015.3314.55516.1972.3891.4350.8171.4363.7344.0954.8264.5623.15211.65411.96leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRPIATSYNTQSGGSTRNQMTCGKLPGLLSYGVFGFIEMLYCI*

>peptide 2 (60 aa)
MGSRGVIADKWSMRILWACAIGSAVSLYMVAVERQAQNRQRMLAEELKAMESGESNGKDG*

>peptide 3 (89 aa)
MRCSPKRTKEEKKTQWEVGTNTQRCFCICCKLKAKVPRGWGKDISRFLVARVLRTTCRLEHVFQACQAWNVDYGGDKHQAVLYGTPDII*

>peptide 4 (62 aa)
MEYLASSKCYIVFKEELLDEEKLWDLIKTRSWLWLKSKVKNCCFSWYTWSTDPMLCLKEMAQ*

>peptide 5 (44 aa)
MWKVTWFAVIWSIWLHRNAILYLRRSCWMRRSCGTLLKQDPGCG*

>peptide 6 (34 aa)
MSKRNGTISYMELQHNKYMGRAKFLAYIPWEAEE*

>peptide 7 (65 aa)
CNSKSLLVLPQFNINDALFSKEDERGKKNAVGSGNKYSTLFLYLLQIEGKGSKGVGEGYIQVFGS*

Sequence

>CNT0000377
TGTAATAGCAAAAGCCTATTGGTGTTACCTCAATTTAACATAAACGATGCGTTGTTCTCCAAAGAGGACGAAAGAGGAAAAAAAAACGCAGTGGGAAGTG
GGAACAAATACTCAACGCTGTTTCTGTATCTGTTGCAAATTGAAGGCAAAGGTTCCAAGGGGGTGGGGGAAGGATATATCCAGGTTTTTGGTAGCTAGGG
TGCTAAGAACCACCTGCAGACTGGAGCATGTATTTCAAGCATGCCAAGCTTGGAATGTAGATTATGGAGGAGATAAACATCAAGCAGTTTTGTATGGAAC
CCCAGATATAATATGAGATATGAATATGATATGAACAAAGGGATACTGCAAATTTTATAAATTATAAGACAACACAATCTGGGGGATGGAAGAGGAAACA
TCATAACACTTGTTTTTTAATTGAAGGGTCTCTTAGGCAATACGGAATAGATGCTATAACTGGCTGGGACTAAATTCTGTCCTGCATAATGAGGCCAATA
GCCACTTCTTACAACACTCAATCTGGGGGATCAACAAGAAATCAAATGACATGTGGAAAGTTACCTGGTTTGCTGTCATATGGAGTATTTGGCTTCATCG
AAATGCTATATTGTATTTAAGGAGGAGCTGCTGGATGAGGAGAAGCTGTGGGACCTTATTAAAACAAGATCCTGGCTGTGGTTGAAATCAAAAGTGAAGA
ATTGCTGCTTTTCGTGGTATACTTGGTCAACAGACCCGATGTTATGTCTAAAAGAAATGGCACAATAAGCTACATGGAACTGCAACATAACAAATATATG
GGAAGAGCAAAGTTTCTGGCCTATATACCATGGGAAGCAGAGGAGTAATTGCGGACAAGTGGTCCATGAGAATTCTTTGGGCATGTGCTATTGGAAGTGC
CGTCAGCCTGTATATGGTTGCTGTAGAAAGGCAAGCACAGAATAGGCAGAGGATGCTGGCTGAAGAATTGAAAGCAATGGAGTCAGGGGAAAGCAACGGC
AAAGATGGATGAACTGTGTTATGCTATAATTTTATGAAAAATATGTAGTATCAAATAGCAGATGCAGAGTTTCAGATTTTCTGAAACTTATGATGTAAAA
GGTTTCTGTGTCCATCTTTTGTCCATTCGCTAACAGTACAATTTCTAAAGGTTTGAGCATTTTCCAGTGGGAAAATAATGTACTAGATTTTCATTTCAAA
TCTGTTACGGAAAGGATTGAAATGAGCTTTGCAACCTCATTTTTAACATTTTAGAAAATAAATTTGTTGAGTTACTTTTAAGTTGTACGTTCTTTCATGA
TTTTATTTTTTCCTACTGGAAATAGTTTCCCATGCTGTTGCTAGCATGTCGAAAAGCATGTGCC