Detailed information on CNT0000378 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q94EJ2|HDA8_ARATH, E-value = 2e-86

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000378

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.4391.4431.8680.2620.5720.5030.3370.3160.5870.9860.9710.8370.77100.066leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.92

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDGTTNSLKACTYPLSPVPFGRGMFKLKP*

>peptide 2 (31 aa)
MKAIKLNFVSTLLSVWLHCICPSFHITVKTN*

>peptide 3 (39 aa)
MQERMWIMKIGLLIKLQPLNYSLRQVKIWSKFFFPLLFT*

>peptide 4 (29 aa)
MIQGSKMSHHKAASPLLYQLLPVHLCILGN

>peptide 5 (52 aa)
MFALWRVYIFRIQQNMFQLLATWIDEGYQTQFCFYTLICLAPLHLSKFSHHC*

>peptide 6 (35 aa)
MAIARTWMDRYCLFIQGISLTPMTVRIPWSKCSKP*

>peptide 7 (49 aa)
MMKPTCNPFLKQREPEKLLTDLLLSNNHLLKHDIFPGDYHTKSLTDHRS*

>peptide 8 (39 aa)
MVHMKRDGKNLIRSIKPLCRSISIMHINIYDRNLLAAGI*

Sequence

>CNT0000378
CTTGAAAATCCCTCAATAGTTACACGATAAATATTAACCCTTCTTGAAAAGTATCAAGATTTATTTCACACGCACAGAAGGAAGTGTCTAGTGAGTTTCT
CCACTAGCACACTTTATCTTTTTGATAATTCTTAATGGCTTCTATAACTTGGACAGAAAATGTCTCGTCGTCTAGGTAAAAAGCAATAGGATCCGCTAGT
AGAGGCATTGGTAGGTTGAGAATCCCCTCAAGTGTTGCATGTAAACAATATGCAGAATATGTGACATGATATCCACCTTCCTGGACAATTAGAAGGCGTC
CTGCACTGTGCCTTTTCGCAAGAAGATGGACAATTCGCCCTATTTCTCTATAGCCCTCCATTGTTAAGCATTGCCTTCCATTGGGATCAAACTATGGCAC
ATGAGGATATAATAATATATAAGTAAAGGAAAATTCAGTTTCTTTTTAATACTGTAACCTTGATGCAACATTACAACATAACCAGATAAGGCAATTGTTG
CCGTAACCTTAGGAGGTGTTAAGTAGGGGAGATGTTTTTTCATGTCCATGAATCATGTTCCTAAGAATGAATTGAATTTGTTTGATTGATTATTGAGAAT
TTTTTAATAATTTTTCCTAGGAATCAAAGAATTATGCATATTTTTACTGATTATTTTAATTATTTATCACATTATATAATTTCATAAACAATAAAATAAT
TTTTACTGTAAGAAAAGAATAATTAAACTTGAAAGAGTAAGATTCTCACCTCCTCCATGGGAAAGTTTTCGTGAAAAACTTATTAAAAAATATTTTCGGA
AAGCATTCATTCCCAAGAATGTTATTTGTTTAAAATATAGAAAACTAAAAACGTTCCCTTAAAACAAATAAGAGAGGTGATTAATCCAATGCAGGAAAGA
ATGTGGATCATGAAAATTGGACTGTTAATAAAATTGCAACCATTAAATTACAGTCTCAGGCAGGTAAAAATATGGAGCAAGTTTTTTTTCCCCCTACTTT
TTACCTGAAGGAAAAATCATGCAGATTAAATGTTTGAGTGATTGAAAGGAAATGGACAATCTGATTGGCACAATTGCTCAAATTGCCATGCATTAAATCT
TTGAGTGATTGAAAGGAAATGGACCATTTGATCATTAATAACATACTATAATTTGTCAGTAAACTAAATTCCACTAGTAAATGGCAATTGCTCGAACTTG
GATGGACCGTTATTGTCTATTTATCCAAGGGATTAGTCTCACACCAATGACTGTGAGGATACCCTGGTCAAAATGTTCAAAACCATAAAGAGAAAAGCTA
AACACCAGTGCTCATGTCTTTTTCATATAATCAGTTAGTCACCCTCACATTAGAGCTATGATTTGTTAAATAAATCATGATGAAACCCACATGTAATCCT
TTTTTAAAACAAAGAGAACCTGAAAAGTTATTGACAGATTTGCTACTTTCAAATAACCACTTACTGAAACATGATATATTCCCTGGGGATTATCATACTA
AGTCACTAACAGATCATAGATCATAGTGACTTGATCAGTGGTGTTTTTCTCAATAGAATACATCATCTTTGTAACATGTTTGCCTTATGGAGGGTATATA
TTTTCAGAATTCAGCAAAACATGTTTCAACTGTTGGCTACTTGGATTGATGAAGGCTATCAAACTCAATTTTGTTTCTACACTCTTATCTGTTTGGCTCC
ATTGCATTTGTCCAAGTTTTCACATCACTGTTAAAACTAATTAAGGACGTCTCTTGAAAGTCATGTGCTAATATCTTATCAGGTTTTAATTTATCTCAGA
GCATGAATTCAAGTCTACATAAACTAGGCAATAAAATGCTAAAATGATCAAAATATAAATTGCCAACAGCAAAAATAGAATAACTTACTGCATTAGAGTC
TTGTCCAAGAACCAAAACTATCATATCAGGCCCAAACTTTTGGATGGATGGAACAACCAACTCATTGAAGGCATGTACATATCCCTTGTCCCCAGTTCCA
TTTGGTAGAGGTATGTTCAAGTTAAAGCCATAACCTTCTCCTTCACCTAGCTCATCAACAGAGCCACTTTGCGGATGAGATGGACCCCATGATCCATGGT
TCATATGAAGAGAGATGGTAAGAACCTTATTAGATCGATAAAACCCCTCTGCCGTTCCATTTCCATAATGCACATCAATATCTATGACCGCAACCTTCTT
GCAGCCGGAATCTAAAGCCAATTGCACAGCTAGACCTGCATTGTTAAGGAAACAGTAGCCATCGGCCAGAGAAGGCTGAGCATGGTGACCAGGGGGCCTA
ACCAATGCATAGGAAACTTTTCCATCCCCATTCAGTAAATGCTTCATCGCAGATAGTGTAGTCCCAGCAGCAAGAAGTGCAGCATCCCATGATCCAGGGT
TCAAAAATGTCCCACCACAAAGCTGCTTCCCCCCTTCTTTATCAACTTCTACCAGTTCATTTATGTATTCTAGGAAAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G31380.1 histone deacetylase 8 protein coding CNT0000378 1740 641 CDS_UTR Cis
GLYMA12G31380.1 histone deacetylase 8 protein coding CNT0000378 2364 840 CDS Cis