Detailed information on CNT0000379 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0023513, E-value = 8e-06 (A. trichopoda)
CNT0025508, E-value = 8e-06 (O. sativa)

Expression of CNT0000379

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1254.0932.61401.4191.7821.7933.3630000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKLSQVKSQPNINPSESKRERKAFICTPTPR*

>peptide 2 (33 aa)
MAMYFHGSTSEIQPSSADGGLQTLYLMNPTYVP*

>peptide 3 (36 aa)
QQSPLITHISLFLNIINSYRNFRLEKTTELQREYYS*

Sequence

>CNT0000379
CTCAGCAGTCACCACTGATCACTCATATCTCCCTATTTTTAAATATTATAAATTCGTATAGAAATTTTCGTTTGGAGAAGACAACAGAGTTGCAGAGAGA
GTACTACTCATGAAACTCTCCCAAGTGAAGTCCCAACCCAATATAAATCCTTCTGAAAGCAAAAGGGAGAGAAAGGCTTTTATTTGCACCCCTACCCCGC
GATGATGGACACTTTGTCTATCTAGACAACACCTTTCTACCTTCCTTCTCAGCTTCATCTCAAGTTTATAACTCCCTCTATATCCATTTATTAATTGAAC
AAAATGGATCTGTGTCAAACAAGCAAGAATTTAATTAAGTCCCCAACATTGGTGGAGGAAGCGTGTGTTAATCCAACCTAACCGAACCATATACATGCAT
AATGGGCTAATAGAAGTACTATATGGATCCTAGAAAAGAATGATGAATTGAAATGAAAGGCTAATAATAGAAAGTTGTTGTTGTTTTTTTGTACAGTGTC
ACTGAGTGAGAGAGAGAGAGAGAGAGAGACATCATAGAAGAAGAAGAAGAAGAACGCAACATGGCGATGTACTTTCACGGAAGCACTTCGGAAATTCAAC
CTTCTTCTGCAGATGGCGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTAACGCTGACGCGCCGTACCACCCAACAGCGCTCCTCGTC