Detailed information on CNT0000383 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000383

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.9810.0368.70129.2847.2288.4748.5278.21818.31414.64617.43915.28616.4535.69822.979leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.53537.5

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MVDRYKKSRKLKERETSSCSSVLGLHLFPLLVKNLQSSNTASLALFPIQSTIYFFHFPLTSHSELVVTYR*

>peptide 2 (30 aa)
MVNDVHCYAQAVKLFLNSFGVNVVEDLFPI*

>peptide 3 (58 aa)
MSRPMLLVFLLIILIITSQFEWKQQLVADVDSNPSVSQKQHQISKAGETVKEKVTFQL*

>peptide 4 (73 aa)
MLTLTPACRRSSIRFPRLEKPLRRRLHFNYNRVKKISQNMREVLIEIITQMRTVYMLAFIDYFSAREEYSKTE*

Sequence

>CNT0000383
TTTAGATTCATTTGATGGCGGTGTTAAACTAGGGTTCCTCTTTATAAGAATTGAGGCATAGGGTAGCGTTGGGTGCTCCCAACCGCAACGAATAACAGCC
TTGATCTTCCAAGTAACTTAACTTCCGTAAATGGTTGACAGATACAAGAAAAGTAGAAAGTTGAAAGAGAGAGAAACATCGAGCTGCAGTTCTGTTCTAG
GGTTACACTTGTTTCCATTGCTGGTAAAGAATCTCCAATCTTCCAACACTGCGTCACTCGCTTTGTTCCCAATTCAGTCCACAATTTACTTTTTCCACTT
TCCCCTAACCTCCCACTCGGAACTCGTCGTTACCTATCGATAATGAATTTGGGGTTACCTCGCTCACATCCATCGGTGTTTACTCTGTAATTAGGAACCA
TGTCGAGGCCCATGTTGCTTGTTTTCTTGCTGATTATACTTATAATCACCTCACAGTTCGAGTGGAAGCAGCAGCTTGTGGCCGATGTTGACTCTAACCC
CAGCGTGTCGCAGAAGCAGCATCAGATTTCCAAGGCTGGAGAAACCGTTAAGGAGAAGGTTACATTTCAATTATAACCGAGTGAAGAAAATTTCCCAGAA
TATGAGAGAGGTGTTGATCGAGATTATAACACAAATGCGTACAGTTTATATGCTTGCTTTCATAGATTATTTTAGTGCAAGAGAAGAATATTCGAAGACT
GAATGAGCTAGTTCGGCATCTCCAGGAGCAACTGCAGCAGTGTAGAGGACGCAATGGAACTATAAATGGCACTGTAAGCCCTCTAGCTGAGCGGATTCTT
GAGCTTGAGCGACAGCAAATTTTAGAGGATTAAGCAAATGCAGCAAGTATGGTAAATGATGTTCATTGTTATGCTCAAGCTGTGAAGTTGTTCCTTAATT
CGTTTGGAGTGAACGTTGTAGAAGATTTGTTCCCTATCTGATCAATTATGATTTTCAACTCTATCTCAATGGAAAGTGAAGTATTGTAATCTTGCTCAAA
AAGTTGTTGAATGATATAGAAGCATTATATCTTATACCGGTTAGATCGTTTCTGTAGTTTAACATTTTCACATTTCTCTCTTGACATCTAATACTGCCGT
CCTTTTGGCACATATAATTGAGGAGATCTTTGAGTAAACTCTCTTTGTTATTGAGCTTTGTGAAAACGCAAATAAT