Detailed information on CNT0000387 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000387

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6241.9381.48601.1520.7230.5661.5931.18300.515003.3140leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LHYQGFQLKVSDMNFSIGKNGQAKNSLSKGLTYSTIYQKWYAWKDNRNHN*

>peptide 2 (40 aa)
MRGRIIETITNQKWSQKPAPLSHGKKTQVVAACLEWKILVG

Sequence

>CNT0000387
CCTGCACTACCAAGGTTTCCAGCTGAAGGTGTCTGATATGAATTTCTCAATAGGGAAGAATGGTCAAGCAAAGAATTCCCTGTCAAAAGGACTAACATAT
TCGACAATATATCAAAAATGGTATGCGTGGAAGGATAATAGAAACCATAACTAACCAGAAATGGAGTCAAAAGCCTGCTCCACTCTCTCATGGGAAGAAA
ACCCAGGTGGTGGCAGCCTGCTTGGAATGGAAAATCCTGGTGGGGC

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G15670.2 Uncharacterized protein protein coding CNT0000387 633 246 CDS Trans
GLYMA11G15670.3 Uncharacterized protein protein coding CNT0000387 633 246 CDS Trans
GLYMA11G15670.4 Uncharacterized protein protein coding CNT0000387 633 246 CDS Trans
GLYMA12G07791.1 Uncharacterized protein protein coding CNT0000387 708 246 CDS Cis
GLYMA12G07791.2 Uncharacterized protein protein coding CNT0000387 708 246 CDS Cis
GLYMA15G04950.2 Uncharacterized protein protein coding CNT0000387 211 246 CDS Trans
GLYMA15G04950.3 Uncharacterized protein protein coding CNT0000387 211 246 CDS Trans
GLYMA15G04950.4 Uncharacterized protein protein coding CNT0000387 211 246 CDS Trans