Detailed information on CNT0000401 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 1e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0041465, E-value = 1e-07 (A. thaliana)
CNT0010629, E-value = 2e-12 (S. tuberosum)

Expression of CNT0000401

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4330.3481.243068.97855.25250.55242.64500000.17400leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)051015202530354045505560657075

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LVAEIINHSLNNVDYLLVEISLRIQTTLVRLRQGRPRSLSSFSASQQ*

>peptide 2 (36 aa)
MVALGQVGVWEFWGVALGQVGVWEFWGVGCMEHMWN*

Sequence

>CNT0000401
TTGGTAGCGGAAATAATTAATCATAGCTTAAATAATGTAGATTATTTATTAGTAGAAATTTCACTTAGAATACAAACGACTTTAGTGAGGCTGCGACAAG
GAAGACCAAGAAGCCTTTCAAGTTTCAGCGCATCACAACAGTAATAGTAACCAAGTATGAACGAAATGTTCGTTGGCTAATTGGCACGTGCCGGGCACAA
ATACTGAAATACACAGAATAATGATGAATGACGAATATAGCAATAGGAAGCTACACATTATAAGTGTTTGATTTAATAGCAGACGAATCCCTTGGGAACA
CCCTTTCCACAGTAGTTTAGAAGCAAGCTCAAGTTCACTGGAACATTGAGGTTGATGCCCAACACATTAGCCTTGAGAGCAGTGCAAAGGCACACTGCAG
CTTCAAGATCAGCAAGACCCTGAATTAGGTTGCAGCATGGGGTCTTTGGTGGCTTCCCAAGTTGCACATTAATCAAACCTAACACATCAGCACACACACC
GAACTTAATAGTGTCTTTGGGGCAGCTTGCTAGCTTTGGGGATGGTGGCTTTGGGACAGGTGGGTGTTTGGGAGTTTTGGGGGGTGGCTTTGGGACAGGT
GGGTGTTTGGGAGTTTTGGGGGGTGGGTTGCATGGAACATATGTGGAACTAACCACAGTGAAGAAGAGAACATTGAGACACAAGAG