Detailed information on CNT0000406 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4IME2|MSL8_ARATH, E-value = 5e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000406

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000.6591.1490.3611.8361.1922.2144.3672.0541.5431.57400.668leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNYLWSSEQGTFEQVHKHQFVPMAFIALEKYYLR*

>peptide 2 (42 aa)
YVFPLICCLIQILIIEDNSLFPFSLLSYCFLFCKYTYLDDLM*

>peptide 3 (29 aa)
MREDEAAKTMNIFEGASKTQRISKSALKN*

>peptide 4 (39 aa)
MVIDEDFLEEIWAISIVVGSCLKVMTSEFFRCNSYSNIL*

>peptide 5 (33 aa)
MLLNLALNKVFITLLFVPLFSFLGGIGVRIFLP*

Sequence

>CNT0000406
GTTATGTTTTTCCCTTGATTTGTTGTTTGATACAAATTTTGATAATTGAGGATAATAGCTTATTTCCTTTTTCTCTATTATCTTATTGCTTTCTGTTTTG
TAAGTATACATACTTGGATGACTTGATGTGATTTATGCGAGAAGATGAAGCTGCAAAAACCATGAATATCTTTGAAGGAGCATCTAAAACTCAGAGAATT
AGCAAATCAGCCTTGAAGAACTAGGAATTAGCAGAACCGTCAATAAGAGATGCTTTTGAATCTTGCATTGAACAAGGTGTTCATCACATTATTGTTTGTC
CCTTTATTCTCTTTCCTGGGAGGCATTGGAGTCAGGATATTCCTTCCTTAAGTGCAGAGGTAGTGAAGGAACACCCAGATGTGTCATACAATGTAACTGC
ACCCGTTGGACTACATGAACTATTTGTGGTCTTCTGAACAAGGCACATTTGAACAGGTTCATAAACATCAATTTGTGCCTATGGCGTTTATTGCTTTGGA
AAAGTATTACTTGAGGTGACAAAAATTGTTGATCCGCCAATGGTCATTGATGAGGATTTCTTAGAGGAAATATGGGCTATATCCATTGTTGTTGGGTCTT
GCCTAAAAGTTATGACATCAGAGTTCTTTCGATGTAACAGTTACTCCAACATCCTCTAGTACAAAACACAAAAGAACTAGCAGTTTAAAGAGGCCAGGAA
CTACCGATTCGTAGTCACAGGGTAGTGATATAGGAAAACTTTCTATTCTTTTAGGTCTTAAACTTTTTAACTCTAACGAACTTATAAATTTTATATATCT
TCCTTTTTTCCTCAATCATTAGTTATGTGTGATGTAGGACTATTTTATATTCGACAAAAGGCTTAAAATTAATGGGTTGTCCGCTATAGTTGGTATTTAT
CAGAAACAAAATTGTTGAATTAATAAAGTATCATGCCCAAATGAATTCCTTTTTAAAAAAACAAAATAATAATATGAAGAATCATT