Detailed information on CNT0000414 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000414

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6392.5362.7841.5361.005000.3090.6880.0920.4990.4360.6590.3210.26leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVELNSPFNFPYKSCKTVFMCIIILYIYALH*

>peptide 2 (37 aa)
MGNGEMLCPPSTSPCMSSWQHSKSLRDSEEGANGSPR*

>peptide 3 (92 aa)
MVSGYSEGELIKKFGNCFLSLPVSHTLGVIQRLFCAFMSRFGWWNLIHPLIFLIKVARQFLCASSSYIYMLYTRWGMSYNITGFPFVFSTGN*

>peptide 4 (33 aa)
MKPIRRDDLFVTLRLVRSMTNLKQRHTHWVTEF*

>peptide 5 (45 aa)
MHIRNCNLLLLNIFWLQKLSLLIIESYKDAHKKGVQECCQGSMRG*

Sequence

>CNT0000414
TCCGATCAAACAAAGCATAAACGAGTAGTAGTTGGAGAAAAAAGAGTCAAGTATATTATAACGCGGCAATTTGACAGTGATAACTGATAAGTGAGAAACA
CATGTACAGTCGATAATGAAACCCATTCGAAGGGATGACTTGTTTGTTACTTTACGATTGGTCAGATCTATGACTAATCTTAAACAGAGGCACACACATT
GGGTCACCGAGTTTTGAGTTTTCAGCCTCACTGTCCAATACATAGAACCAAAATATCTCTCCATTAAGTAATATACTGTAGTACTTTTCACCCTCCAAAA
TCCATCATCTCCATAATCAAAACCCAAACTTTCAACTCTTTTCTCCTCCGCATGGAAGCCAAATCCAATGACAGCCGCACTTTCTCTATCAATTGAATGG
GAAATGGCGAAATGCTTTGCCCTCCATCAACTTCTCCCTGCATGAGTTCTTGGCAACATTCTAAATCTTTACGAGATAGCGAAGAAGGTGCAAATGGTTC
TCCAAGATGAAGCAGTTATTATGCAGAGTAGAGTTTGATGGTTAGTGGTTACTCTGAGGGTGAGTTAATAAAAAAGTTTGGTAATTGCTTTCTCTCTCTC
CCTGTATCTCATACTCTCGGTGTTATACAGAGACTTTTTTGTGCTTTTATGAGCAGATTTGGATGGTGGAACTTAATTCACCCTTTAATTTTCCTTATAA
AAGTTGCAAGACAGTTTTTATGTGCATCATCATCTTATATATATATGCTCTACACTAGATGGGGTATGTCTTATAACATCACAGGTTTCCCTTTTGTTTT
TTCCACTGGCAACTGACTTGCCTAGTTCACGAAATTGAATATGTCAAAATTTGTAGGTATGATTATGAATATGGATTTCATGTATTGACAGTTGGGGTGG
ATAACTGATAATTTTTATTAATCAAAGTATGGTCTTGAATGCACATCAGAAATTGCAATTTGTTACTATTAAACATCTTTTGGTTGCAGAAACTTTCTCT
TTTAATCATTGAGTCATACAAGGATGCACACAAGAAGGGTGTCCAGGAATGCTGCCAGGGCTCAATGAGGGGTTGAAGTCATGACATTAACCGTGAGATG
AACCTCATTTTTGCATACAAAAACCCTGTCAGAAAAGGCTTATTTGTCCTTTGATAGTGATTTTGATTTTGCAATCTTATTTATTCAAATTATGTACGGA
TAATTGGAAATGATGGTGAACCTTCTTTTCCCTGCTTCTTTTGTCCCTGTCCTATTTTGTTAAGTGGGA