Detailed information on CNT0000428 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000428

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLKMPCICIHPKLVYIIGQNLDAVCLVFGF*

>peptide 2 (74 aa)
SGVPSMVQFQLSRGVLNLEIVLLSSIYKQLWEQQNMHVENALYMYPSQACIYYRTKFRCSMFGIWFLIRIGVLL*

Sequence

>CNT0000428
GTTCAGGAGTTCCATCGATGGTGCAGTTCCAATTATCCCGGGGTGTGTTAAACCTGGAAATCGTACTCCTATCCAGCATATATAAACAATTATGGGAGCA
GCAAAACATGCATGTTGAAAATGCCTTGTATATGTATCCATCCCAAGCTTGTATATATTATAGGACAAAATTTAGATGCAGTATGTTTGGTATTTGGTTT
CTGATTAGAATTGGTGTTTTACTTTGATAATTTGCATAATAGAGACATATGAATAAAAGTCAATGTAGATTATAAAAATAAAACTTCAATTTAATTGGAG
AGCAACACAAAAATATGTATAAAATTGTATTATATTATTAGATTAAAATGATCCATTATTATGTTCACCTGGTATCTGAGGCGAATGAGCATATATTCCC
TCAAAGTACCATATAGCTTTTGTGGCACA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA17G17530.1 Uncharacterized protein protein coding CNT0000428 1134 429 CDS Cis
GLYMA17G17530.2 Uncharacterized protein protein coding CNT0000428 1134 429 CDS Cis