Detailed information on CNT0000433 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O49954|GCSP_SOLTU, E-value = 1e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000433

Sequence

>CNT0000433
TGAGTCTTATTCCTCATTGGGTCAGTTCTATTCCCAAATTAGTGGGAATCATGATTTTCAGCCAATAAAAGAGTGTTAGAAAGAGAGTATAAGAGAATAT
GTTGCTAGCATTCCTCCTAATCTATATCAAACAAGAGATAATGGAGTAGGTTCCTTGCGTGAAGGATGTCATAAGAAAAAGAAATTATTGTATTTGTATT
GTCTAAAAGATCATATAATCCTGGCAAATCTCCATGAGACATGTAACCACATTTTTTAAATTGTTGTTGTGTCTCGTGAACATTGGTTGGGACTACATAG
TAATAATTTCTTGAAATGAGAAACATATAGTAATGTAAACAACTACATGATTACCTGTGGTAGGCCAGAACTTTGAAGCACGGAGCCAAGGAGCTGGGAA
GGCTGCATATTCCCTGGAGTATGGTTTTGTCCATGCATCAGCCATGAGCAGTGATGGTGGATGAGGGGCGCTCTGTAGAACATTATAGATAATCAATAAA
AAGTTCACGAA

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G05420.1 Uncharacterized protein protein coding CNT0000433 312 144 CDS Trans
GLYMA06G05470.1 Uncharacterized protein protein coding CNT0000433 302 144 CDS Trans
GLYMA14G10820.1 Uncharacterized protein protein coding CNT0000433 803 499 CDS Trans
GLYMA17G34480.1 Uncharacterized protein protein coding CNT0000433 1224 511 CDS Trans
GLYMA17G34690.1 Uncharacterized protein protein coding CNT0000433 1266 511 CDS Cis
GLYMA17G34690.2 Uncharacterized protein protein coding CNT0000433 976 354 CDS_UTR Cis