Detailed information on CNT0000436 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000436

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LCFMYDSFIAGLCLTRNCLTAGLCVRHDWLAVGLCI*

>peptide 2 (44 aa)
CASCMTASLLGCVSRVTVSLLGCVSDMIGSLLGCASDMTTSLLG*

>peptide 3 (31 aa)
MFHIKLPHCFAVFQVKPPHCFAVFQIKPHHY*

Sequence

>CNT0000436
CTGTGCTTCATGTATGACAGCTTCATTGCTGGGCTGTGTCTCACGCGTAACTGTCTCACTGCTGGGCTGTGTGTCAGACATGATTGGCTCGCTGTTGGGC
TGTGCATCTGACATGACTACATCATTGCTGGGCTGAGTTTTATATGTAATCGGCTCACCACTTTGCTATGTTTCATATAAAACTGCCTCATTGCTTTGCT
GTGTTTCAGGTAAAACCACCTCATTGCTTTGCTGTGTTTCAGATAAAACCACATCATTACTAGTCTGATGTTCAGAATGTAGCACACCATTATTTGGAAG
TGTCTCAAAATTGAGCAACTGGTTGCTTGGTGGTGCCTCAGACGCAGGCTTCTGCCTCAGAAGCAGATAAAACCACATCATTACTAGTCTGATGTTCAGG
ACTAACAACATTATCATCAGCTGTAGCTTCAAAGCTTGCTGATGGATTCTTGAGTGGTGCCTCAGACTCAACATGCTGATTGCTAAGGGGACCCCCATCA
TTGCTTGATTGGTTATTGGGTAGTAACTTGGGATTCTCTGACTCACTATTAGGAAGTTCTTCTGTGTTGTCTAATTCAAGATTGGACAATGTCCCTTCAT
TTTCATTGGCACTAGAAGCCTGGGTTTCAGATGCAGGAAGTACTTCTGCTTTGGAACTGGAGAGATCCTTATCAGGAGACTCAGAATTTTCCACATTAT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G32921.1 Uncharacterized protein protein coding CNT0000436 156 157 CDS Trans
GLYMA16G32921.1 Uncharacterized protein protein coding CNT0000436 109 155 CDS Trans
GLYMA16G32921.1 Uncharacterized protein protein coding CNT0000436 129 155 CDS Trans