Detailed information on CNT0000439 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FNX5|DRP1E_ARATH, E-value = 2e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000439

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2240.540.1844.90800001.3191.2310.3820.6271.6234.9253.983leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.7555.…5.25

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MRLKQFVGRDKMNLELIYEGPFNGKRMRMELIELVIICSNSSIC*

>peptide 2 (51 aa)
MPILIPYREWMIDYSETTVPIYRGKTTRMVVGRRFCVEGKETAVCPEAGVI*

>peptide 3 (48 aa)
RLEQAHYEMILAKPCFICWIRNGCTILGDLWLLGGSGSIHITEQLHAR*

Sequence

>CNT0000439
GCAGATTGGAGCAAGCTCACTATGAGATGATCTTGGCAAAACCATGTTTCATATGCTGGATTAGGAATGGTTGCACCATCCTGGGTGATCTCTGGCTATT
GGGAGGGAGTGGATCCATCCACATAACCGAACAGCTTCATGCCAGATAGAAGGGAACTTGCTTGCCGATGCCAAGCATGATAGTTGTTGATAGCTGAAAG
TGAGTTGAAAAACCACTGGGTTGGATTGGGTTGTTGTTGTCCCATTTTGAGTGTTGTTGTTAGTAGTTGCTGCGGAAGAATTGGTTGAGCCGGCCATGGA
TCTTAACTCATGGGAGTATGCCTATCCTGATACCATATAGAGAATGGATGATTGATTATTCGGAAACTACAGTGCCAATATATAGAGGAAAGACAACTCG
CATGGTTGTTGGGAGAAGATTCTGTGTTGAGGGAAAGGAGACAGCAGTGTGCCCAGAGGCTGGAGTTATATAGGTCAGCAAGGGATGAGATTGAAGCAGT
TTGTTGGTCGGGATAAAATGAATCTTGAATTAATATACGAAGGACCTTTTAATGGGAAAAGAATGAGAATGGAGTTAATTGAGCTTGTTATAATTTGCAG
CAACAGTTCCATTTGTTGATTTTTTCTGCTTAACCTGATGTCTGATTCAGAGCTAATACGTG