Detailed information on CNT0000440 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8S949|NACK2_TOBAC, E-value = 1e-47

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000440

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0732.2952.63900.1700000.14000.1440.490leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVVSDKRLVRQLQKEAARLEGELRSPDLSVNSCLRSLLAEKELKIRQMERDMEDLRR

>peptide 2 (41 aa)
KNPQNKILMFCAFSYTNVTSTVAPLHFQGIRLLTSILSISH*

Sequence

>CNT0000440
AAAAAATCCTCAAAACAAGATTTTAATGTTTTGTGCTTTTAGTTATACAAATGTGACATCAACAGTCGCTCCGCTCCACTTTCAGGGGATAAGACTGCTT
ACATCTATCCTCTCAATATCTCACTAGGACGATGCCTCATGCACCAGGCTACTCTTTTTTGTTCAAACGCACCCTAGTTATTTCCATTCAATTTGTATTG
AGTTTGCTTATATGCTGAAGCTGAAAAGTTTTCGACGACTACAAATATACATGTGGAACCCAGTTTTTCTCGTAATCGTTGTCATTTGATGACTAGAAAT
TGTTTAATGTGGAAGTTTGGTTAATTTGAAATTGTTTATTGTGGAAGATGGTTAATTTGAAATAGGCATTGATTATTTTGATAAAGTAAAGACCTGTAGA
ACGATGTAATTTGGTCAATATACAGGAATCTGATTCAGCTTTTGGAGTTTTCTTTTGCTTTTGCAGTGGCGGAAAACGTGGTCACATACCATATAGAGAC
TCGAAATTGACACGAATATTGCAGTCTTCAATAGGGGGGAATGCTCGAACAGCGATTATATGTGCCATAAGTCCTTCCTTAAGTCACGTGTAGCAAACAA
GAAATACACTAGCATTTGCTACCAGTGCCAAGGAGGTCTTTAATACTGCCCGAGTGAATATGGTTGTTTCAGATAAGAGACTAGTTAGACAGTTGCAAAA
GGAAGCTGCCAGGCTTGAAGGGGAGTTACGAAGCCCTGACCTTTCTGTGAATTCATGTCTAAGGTCATTGCTAGCTGAAAAGGAGTTGAAAATTAGGCAG
ATGGAGAGGGATATGGAAGATCTTAGGCGAC