Detailed information on CNT0000445 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0D5G4|Y7633_ORYSJ, E-value = 1e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000445

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7872.511.92302.0240.5350.7331.082.8454.8123.4272.7032.6040.3060.124leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.7555.…5.25

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MAFKWKCCSLVPSKVGGFGFASLLRYTRPSEKIQWAQCKDCFKWRKLPASALLPSKWTCSDNLWDPER*

>peptide 2 (50 aa)
MWLAREKENIISGRRVSKNDHLTMHDVKIHRQFSPYSLNLVHVYLHKARD*

>peptide 3 (84 aa)
LKNTSSTSHDHHFLGQQKTLDLILKPNPPFLSPTPNSKVVVSLFPILHGRCHRIAPLSLLPRPSLFSSLCLLIGTIPPSLTNKV*

>peptide 4 (38 aa)
MLVCNQYISALFFIYQILYAAKSSCSTAQELTVEQLENL

Sequence

>CNT0000445
CTTAAAAACACAAGTTCCACCTCTCACGACCATCATTTCCTTGGTCAGCAGAAAACCCTAGATCTTATTTTAAAGCCAAACCCTCCCTTTCTTTCTCCAA
CGCCCAATTCCAAAGTCGTTGTTTCACTTTTCCCAATCCTCCATGGTCGCTGCCACCGCATTGCTCCACTCTCTCTGCTGCCGCGACCTTCCCTCTTCTC
CTCTCTCTGCCTTCTGATCGGTACCATTCCGCCCTCTCTTACTAATAAGGTGTGAGCGCCCCCACACCCTCGTAGCCGCCAAGGATATACTACCTCTATT
ACCAGTGTGCTCCGTACTGCTTACCAGACTAACGTGATGGCCTTCAAATGGAAATGTTGTTCGCTTGTGCCTTCAAAGGTTGGGGGTTTTGGATTCGCAA
GTTTGCTGAGATATACGCGTCCAAGTGAAAAGATCCAGTGGGCTCAATGTAAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCACTTCTTCCATC
AAAATGGACATGTTCTGATAATTTGTGGGATCCAGAAAGGTAACAAGAGTGATGAAATTCTCTTAATTCTCATAAGCATTTTTGGTCTCCTGTGTTATCA
TTAGCTTCTTTTTTTGCCCTCCATTTTAAGCTTTCCCGAGTGTATAATAAGAATGTATTTCATATTTAAACAATTAGTATGGATAGAAAGTCATCCTTGA
TGTTCAAGAGGGTATCTTTCTGGACCTTAGATACATCTAGCTAACATGTACATATGATTTTCCTTTCATAATAGAGTTGCAGTATATAAATGTATTTCTT
GCTTTATTTTGGATTCAACTGAAAGTGCTATGGACAAGCTTTGTATACATGGGATATCTTGTGCTGATATTTAGACTTTGGTAGGAAGGTTTGTTATTTA
AATATGATTCTTTTGGTGATGTTTTTGTGATATGAAATATTTATCTATTTCAATTTATTGTAGTGTAGAGCACTCTAGGTAACACATATTTCCCTGTCTA
GGATGTGGTTGGCAAGAGAGAAAGAAAATATAATAAGTGGGAGAAGGGTTTCGAAAAATGACCACCTTACCATGCATGATGTCAAGATACACCGTCAATT
TTCACCCTATTCCCTCAACTTAGTTCATGTTTACTTGCACAAGGCACGTGATTAATTTATCAATCTAACAAGGCTGTCCCATAGAATCATTTGCTCAAAC
TTTATAAACCTATGTTAGTATGTAACCAATATATTAGTGCATTATTTTTTATTTATCAAATTCTCTATGCTGCCAAATCTTCTTGTTCAACTGCGCAAGA
GCTGACAGTAGAGCAACTTGAGAATTTGCT