Detailed information on CNT0000446 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000446

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.9231.9292.10202.2920.1920.7510.8452.9833.7662.5952.8343.09200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAFKWKCCSLVPSKVGGFGFASLLRYTRPRLGVLCEFFTKKHCGVQSILTLL*

>peptide 2 (75 aa)
DHHFLGQQKTLDLILKPNPPFLSPTPNSKVVVSLFPILHGRCHRIAPLSLLPRPSLFSSLCLLIGTIPPSLTNKV*

>peptide 3 (31 aa)
MEMLFACAFKGWGFWIRKFAEIYASKVRGIV*

>peptide 4 (72 aa)
RPSFPWSAENPRSYFKAKPSLSFSNAQFQSRCFTFPNPPWSLPPHCSTLSAAATFPLLLSLPSDRYHSALSY*

Sequence

>CNT0000446
CGACCATCATTTCCTTGGTCAGCAGAAAACCCTAGATCTTATTTTAAAGCCAAACCCTCCCTTTCTTTCTCCAACGCCCAATTCCAAAGTCGTTGTTTCA
CTTTTCCCAATCCTCCATGGTCGCTGCCACCGCATTGCTCCACTCTCTCTGCTGCCGCGACCTTCCCTCTTCTCCTCTCTCTGCCTTCTGATCGGTACCA
TTCCGCCCTCTCTTACTAATAAGGTGTGAGCGCCCCCACACCCTCGTAGCCGCCAAGGATATACTACCTCTATTACCAGTGTGCTCCGTACTGCTTACCA
GACTAACGTGATGGCCTTCAAATGGAAATGTTGTTCGCTTGTGCCTTCAAAGGTTGGGGGTTTTGGATTCGCAAGTTTGCTGAGATATACGCGTCCAAGG
TTAGGGGTATTGTGTGAATTCTTTACAAAAAAACATTGTGGGGTGCAAAGTATTTTAACATTATTATGACGAAGATGATTGTTGGGAAGGAAGGAGGATT
TTTATAAAACAAGTAATTAAAAAAATTATCTAAGAGTCGGGATCCAGAAATTATTTAATAGGGATAAAAAAAATAATTCATTATATTTTCATAGAAAAAA
TTATAAATTTTTACAAAATACATTTTTATACAAAAAATTCTAAAAGATTTAAGTTTTTATAAATTACAACCACCTTCGGCACATATCAATTGTGAAATCC
TGGTGGCTTTGCTTACAGACTCTGGTGGCTTTCAAATGGTAGTATATGACCTTATATATGCTTGATTCTTGTTTTCATCTTGTGAATTTTTAGCATTCTT
TCATCCTGCGAATACTATTGCTTGCTAAATTCTCTTTTGTGTATTTAATGTAAATATAAATCTAAAATTCAATCTTGAAATTACTGATTAAAATCAAACA
ATATCATACCAATTCATTTAACGTGTG