Detailed information on CNT0000451 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q07078|HSP83_ORYSJ, E-value = 1e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000451

Peptides detected in this lncRNA

>peptide 1 (60 aa)
QACTYSITSSKSPIDDALALAAASLLCRLPCSALLVRLCLSSHPCRRCNFRYHSQRGMTS*

Sequence

>CNT0000451
TCAGGCGTGCACGTATTCGATCACTTCTTCGAAATCTCCCATTGACGACGCGCTTGCCCTAGCAGCAGCTTCTCTCCTCTGCCGTTTGCCGTGCTCCGCG
CTCCTCGTCCGTTTGTGCCTGAGCTCCCATCCATGCCGCCGATGTAACTTCCGTTACCACTCACAAAGAGGGATGACATCGTGAGCTTCCTTCGCTTAAC
ATTGTTCGTAGTGCTTTTGTTAAGGGTCATGTCACCAGTAGGGGATCCAGTTTTTGCAAAAAAAATTAAAACTAAATATTGGTTCTTGAATTGAATAATA
AAGTATATTTGGGACATCGTGTTCGAGTTTTTATTGCTAAAGGAAAGGGTCAATATACCTCCAATAGAAGGATCTTGTTCTGCTGCAGCATTTCTCTAGA
AATGTTGAGAGGAAGATCCTCAGAATCCACAATACCCTTAACAAAGCTATGATATTCA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G26711.1 Uncharacterized protein protein coding CNT0000451 190 88 CDS Trans