Detailed information on CNT0000480 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SB81|PER42_ARATH, E-value = 3e-82

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000480

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.1550000000000000.4250.172leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.0250.050.0750.10.1250.150.1750.20.2250.250.2750.30.3250.350.3750.40.4250.45

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVLVGSIALLSDLTLCASERVVLREQSNGSRKLLEEIVLALGHFLHIRLGPLVIG*

Sequence

>CNT0000480
GGCCCACATCAAATGACCTCTTTTGTGAATACGAGTGTTTTTTCTTTATCAGCAAAAGTGAATACGAGTGTTAACAGTGTATAATGACCGTGGGCCATGA
TTTATTTATTATGTAGCAAGAACAAGCTAGCTTTATTAGTGTGGATATCATAAACATTTTCACTCTCATCGATAACAGCACTACACGCATACATTGACAT
CTTGCCATCGATAGCAGCACTCACATGCATACATAACATAGTAATTAACACCATGAACATGCCCTTCTACCCAACTCTAACCTACTTGCACAGTACTTAT
TGAAATAAAAAATAAAAAAACAAACTAACAAACAAGAGTGACATCGGAAGATTAAAAAACAAAGCGTCTTAATCCTCGCATCCCCATGAACCTGCTGTGG
TCTTGATCGGTTCATTGAACCAATCAACCAACCCATTTAAAGAAAAACACCTTAATTATTTTTTGCATAATATCTTACAGATTTCTTCCACATAGAGAAG
GGGAAGAAAATTCAAGGCCCAAATTAAGCGGGAAGCAATTAAGGCTCCTCATGGTGCTTGTTGGCAGCATTGCACTGCTTTCTGATCTCACCCTTTGTGC
CAGTGAGAGGGTTGTTCTCAGAGAGCAAAGTAATGGCTCTAGAAAACTCCTTGAAGAAATAGTCCTGGCTCTTGGCCATTTTCTTCACATAAGGCTTGGT
CCTCTTGTCATTGGCTAGTTGGTGATCCACTATCAACAAGCCCTTGTTGTCCAATATATTTCTGTAGTAATTGTTGTCTAGAATCATGGGGGTGCCACGG
TCGTTTCTCACGTACTGCACGGCCTTAGGGTCTGGAATGGCATCAGGGCACTTCTTCAGAATGTGAGGGACGTGGTCAGGGTTCAGAGCTGGATCAATCT
CTGGGTACAAACGGTGCACCAACTTCACACAATGGGTTCGACCAACACTGTGTGCTCCT