Detailed information on CNT0000491 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O48722|HMOX2_ARATH, E-value = 1e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000491

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6041.4711.50300.7280.4570.2860.3361.1971.6151.7572.1331.2280.6290.508leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLPLGGDLGIRENFLCRLYCVKLVSCVYEE*

>peptide 2 (42 aa)
MPSTLTHSLFLSYILKLTLIQNSHTRSRPFMGKTYLYNNIRN*

>peptide 3 (31 aa)
MALERDVGLRMIGHQAIMDNMVWCGGRTSSL*

>peptide 4 (102 aa)
SYQQHVQQRSGLKENWIGKIRRAFEGSEMVLGRRKCDSDSRFSRAYICQIFGGTCGDKRTLVSLPFLQYLFFSYSCWSGHWKEVDNLIIICLYFLIQSER
SV*

>peptide 5 (35 aa)
MFKRNYKGIPLYGTNCSSNCLINRHLFSFFVVDLL*

>peptide 6 (34 aa)
MLSEHWSRDDKNRCLKETTKAFRYMGQIVRLIVS*

Sequence

>CNT0000491
TCATATCAACAACATGTGCAACAAAGGTCAGGATTAAAAGAAAACTGGATTGGAAAGATCAGAAGGGCTTTTGAAGGATCTGAAATGGTTTTAGGAAGAA
GGAAATGTGATTCCGACTCCCGGTTCTCCAGGGCTTACATATGTCAAATATTTGGAGGAACTTGTGGAGATAAGCGCACCCTTGTTTCTCTCCCATTTCT
ACAATATCTATTTTTCTCATATAGCTGCTGGTCAGGTCATTGGAAAGAAGTGGATAATTTAATAATCATTTGCTTGTATTTTCTCATTCAAAGTGAAAGG
AGTGTTTGAAAGTTGATGACATAAAGCAGGCCACATAAGAGAGATCTACTGCAGAATAGATCATTATCAAATCATAACTCAAATTTTAGATGTTGAAGTC
ATATAGTGGAGCTGAGGAGAAATTTGAAAGAACATTTTTATTTATTAATAAAAACTACACGTGAAAGTACTAGTAGTTACTTTTAACTCTCCAATCTCTC
TCACCTACTCAAATGCCCAGCACCTTAACTCACTCTTTATTTCTCTCCTACATCTTGAAACTCACATTGATACAGAACTCCCATACAAGGAGCAGGCCTT
TTATGGGCAAAACATATCTATACAATAATATTAGAAATTAAATCATAGGTGGTGACAATAACCAAGCTTGATCCAATTAGATTTATTGAAACTTGCCTGA
ATAGGACTGCACTAATTATCTTATAGGTTCTCAGCTTATCCAATTGTTTCTTCACTTCATTGCCACCTAATCTAGGATATTATAGAGCTGCTGCCAACTT
GATATAATAATTGGTACTTTTAACATTAGATTTCGTCTAAACTTGAAATTCCATTTGAAAATGTTTGGAAAAGAAGACTCTGATTGCAAATATTATGTAG
GTATTTAAGTATCAATTCCATATTCAGAATAATGGCCCTTGAAAGGGATGTTGGACTTCGAATGATAGGCCATCAAGCCATTATGGACAATATGGTGTGG
TGTGGAGGAAGGACCTCGTCCCTTTAATTTCAGCAGTTATATTGAATGGTAGCTCGGTATTGAATTGGACTCATAAAAATATGCTTATAGACTTCTACAA
ACTCATGCAACCTTGTAGAGTTGAATATGTATTTTAACTTTATGGTATTAATTGGTGTTGAAGTCCTCTAGTCAACATAGAATCAGAACTGAGGAATTCC
TTATTTAAAGAATTCAATTATGTACTTATTGTGAAACCATCAGGGTTTGCTTGTCCTTCTATTATTGTTGCTTTTAGGTTTCTGAAGAGCTCTTGGAAGG
CAAGGAGTTGGAGTTTTACAAATGGGAAGGAGATGTACCTGAATTGTTGAAAGATGTTCATGATAAGCTCAACATGCTTTCAGAGCATTGGTCTCGAGAT
GACAAGAATAGATGTTTAAAAGAAACTACAAAGGCATTCCGTTATATGGGACAAATTGTTCGTCTAATTGTCTCATAAATAGACATTTGTTCTCCTTTTT
TGTTGTTGACCTTCTTTGATGCTGCCTGGCCAAGGTGCCTTACATCTGTGATAGATCTGCACAATCTTATTGATAAGGATATTAAGGGCATAGCACAACC
GAGAAAGACACAATTTTTTTAATAGAGATATAGCTTAGCTGGAACTACTTCAGACTCATGATTCTTCAGTATTACACTGTTACTGAATACTGATGTTTTC
CCTCGGATTGAGGCCATAATTTCATACTTGCACTCTGTTCTGTGCCTATTAGTCAATACTTTTGAGATCAATGCTCGAATCTATTGTAATTTAAATACTC
GTATCATTTTAGACATTCATTATGCTACCGTTAGGTGGGGACTTGGGAATCCGTGAAAATTTCCTCTGTAGACTGTACTGTGTAAAATTGGTAAGTTGTG
TATACGAGGAATGACCTTTGCGGAGGTGCATTTTTTCTTTTCCCC