Detailed information on CNT0000495 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q54TI3|Y4636_DICDI, E-value = 1e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000495

Peptides detected in this lncRNA

>peptide 1 (132 aa)
MPGSQFMSHFHTSHSNENLSICLSWSNLHGFPSHNLCFRALPPPFCAFYLHDHHHPCCAAFFLQDHHHPFCAAFFHNHHHHHHPFCAFFLHGHLHPSNAF
FPYHHSPLSSFVLHAHPHPLSSFFLHKHHRPF*

>peptide 2 (32 aa)
MPPCLLLLKSTIFLFLTVNIRFLLRIMTFVHF*

>peptide 3 (121 aa)
MFILIPCLFSSSSVIFIPSTLSLCTVIFIPQVLSLSTAIIIPSVLPFFGIILIPCMLSFSKIILFPCMLSSCTIIFIPSMLSFSMVIIIPCMLMLPMIII
IFSTPSGFMILTIPSSSTNKM*

>peptide 4 (39 aa)
MYKTTDTSNSNIKAASKHSQDAWITVHESLSHLSLEREP*

Sequence

>CNT0000495
GTCACAACATAATACAGAATTTTGGTAAAAAAAAAACATAATACGGAATTTGAAACGAAAACACATGAAACATAGTTCACACACAAATTACATCCTCTAA
AAAGCAAATGTATAAGACAACTGACACATCTAATTCAAATATTAAAGCAGCAAGTAAACATTCTCAAGATGCCTGGATCACAGTTCATGAGTCACTTTCA
CACCTCTCACTCGAACGAGAACCTTAGTATCTGCCTCTCTTGGAGTAATCTCCACGGCTTTCCCTCTCATAACCTTTGTTTCCGCGCTCTTCCTCCTCCC
TTCTGTGCTTTCTATCTCCACGACCATCATCATCCCTGCTGTGCTGCTTTCTTTCTTCAGGATCATCATCATCCCTTCTGCGCTGCTTTCTTTCATAACC
ATCATCATCATCATCATCCCTTCTGTGCTTTCTTTCTCCACGGCCATCTTCATCCTTCGAATGCTTTCTTTCCCTATCATCATTCTCCCTTAAGTTCTTT
CGTTCTCCATGCACATCCCCATCCCTTAAGTTCTTTCTTTCTCCATAAACATCATCGTCCCTTCTGAACTTTCTTCCTTCCCGATCATCCTCATTCCTTC
TGAATTTTCTTTCTCTATGTTCATCCTCATCCCTTGCCTGTTTTCTTCCAGTTCGGTAATCTTCATCCCTTCCACGCTTTCTCTCTGCACGGTCATCTTC
ATCCCTCAAGTTCTTTCTCTCTCCACGGCCATCATCATACCTTCTGTGCTTCCCTTCTTTGGAATCATCCTCATCCCTTGCATGCTTTCGTTCTCCAAGA
TCATCCTCTTCCCTTGCATGCTTTCTTCCTGTACGATCATCTTCATCCCTTCCATGCTTTCTTTCTCCATGGTCATCATTATCCCTTGTATGCTCATGCT
CCCTATGATTATCATCATCTTTTCTACGCCTTCTGGTTTCATGATCCTCACCATACCGAGCAGTTCGACCAACAAAATGTGATTCAACATCCTTGTTATA
ATTTCTTCCTCTCTGCTCAGAGCTATCATCATCAGGCCCTGCAAACCTAGCTGATTTAGATTCAGACTCCATTTTTCTATCATCTTCATCATGCTTGACC
ACTGTGACAGGCTCCCTCTCTCTGTCTCCATCAATTTTCCTGTTACCGTGTGTCATCTCTCGACTTCTACTATTTGATCCCTTTGTAATATCTCTCCCAT
ATGACTTTGTAAGAGAGCCCAATGCATCAACATTAGCACCATACTTCCCTTTATCTGCACCACTATCTCTGGCTTCATCTCTGAATCTATTTTCTTCCAT
GCCATATCCTTTAACTTTCTTTGCAGCAACAGACCCACCTTTTTTTGTTTTTTCACGTCTGTGATCACTAGAACCGCTGTCTGAATCACTGTCACTGCTA
CTCTTGTTAGAGGAAGTGTATGACCCCCTACTAACATATCTGTCTTGACCCAATGCACGCCTAACACCATCTTTATCAGAGTCCTCATCATCAGAATTAT
GCCTCCTTGTCTTCTGCTTCTCAAGTCTACCATATTTCTTTTCCTCACTGTCAACATCAGATTCCTCCTCAGAATCATGACGTTTGTTCATTTTTGAATG
TTGCTTCCCTTCTCGATTTTTATGGTTGGAGACATCTTCATGATCATCAGAATCATCATCCGAAGAATGCCTCTTAAG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G18011.1 Uncharacterized protein protein coding CNT0000495 2427 1290 CDS Trans
GLYMA11G18011.1 Uncharacterized protein protein coding CNT0000495 93 103 CDS Trans
GLYMA11G18011.1 Uncharacterized protein protein coding CNT0000495 125 103 CDS Trans