Detailed information on CNT0000496 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000496

Peptides detected in this lncRNA

>peptide 1 (30 aa)
QHWTLKINIMNIKRINFLQWKERIWNGFNA*

>peptide 2 (35 aa)
MLALLTPCKRWRIHQLFQLFPILPAHHSSFIKFFF*

>peptide 3 (31 aa)
MEGEDLEWIQRLKLNCKSTKWMEQFNLDYEQ*

Sequence

>CNT0000496
CAACATTGGACCCTTAAAATTAATATCATGAACATCAAGAGGATTAATTTCTTACAATGGAAGGAGAGGATCTGGAATGGATTCAACGCTTGAAATTAAA
CTGCAAGAGCACAAAATGGATGGAGCAATTCAATTTAGATTATGAACAATAATTAAACTCTAAGGTTTGAAGAACCATAAGAAAGAATAATAATATCATA
GTCTTATATGTTGGCTTTGCTTACTCCTTGCAAACGGTGGAGGATTCACCAATTGTTTCAACTTTTTCCAATTCTTCCTGCTCATCATAGTTCATTTATC
AAATTCTTCTTCTAGGAGAATTAAGATGAAGAGAAAAAAAATTGTGCATATAAATTGAACAAAATAAGATGGATCACCAAATTGACACAAAGAAGAGACA
TGATGAGTTGAGT

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G18050.1 Uncharacterized protein protein coding CNT0000496 886 334 CDS_UTR Trans
GLYMA11G18050.2 Uncharacterized protein protein coding CNT0000496 1047 412 CDS Trans
GLYMA14G17060.1 Uncharacterized protein protein coding CNT0000496 332 341 CDS Trans
GLYMA17G29590.1 Uncharacterized protein protein coding CNT0000496 1090 413 CDS Cis
GLYMA17G29590.2 Uncharacterized protein protein coding CNT0000496 1090 413 CDS_UTR Cis
GLYMA17G29590.3 Uncharacterized protein protein coding CNT0000496 1090 413 CDS_UTR Cis