Detailed information on CNT0000501 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O48722|HMOX2_ARATH, E-value = 3e-31

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000501

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3821.2881.42601.1480.7480.5430.471.8342.6192.2042.6562.2580.6120.396leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIHLVQCCCSQVSHLLYFIAFTNCGHRLIVYAM*

>peptide 2 (31 aa)
MINQRNDTSRPVLLLSSIPLIILHCFHKLWP*

>peptide 3 (42 aa)
MPSTLTHSLFLSYILKLTLIQNSHTRSRPFMGKTYLYNNIRN*

>peptide 4 (116 aa)
MNIPTRGRPTRRQPPHLRHSPTHRRRVRQRFLCIHEENWIGKIRRAFEGSEMVLGRRKCDSDSRFSRAYICQIFGGTCGDKRTLVSLPFLQYLFFSYSCW
SGHWKEGRFSLPFPLY*

>peptide 5 (52 aa)
MREYYDMFPFNVVPFPVYPIEKIMLQQNALSFIKRKMVFLSYHFSIRKTRDK*

>peptide 6 (35 aa)
MSMVPSPKQKQVVQLQHIQNTKKLSYSFSHSYSQA*

>peptide 7 (30 aa)
MLPLGGDLGIRENFLCRLYCVKLVSCVYEE*

>peptide 8 (34 aa)
MLSEHWSRDDKNRCLKETTKAFRYMGQIVRLIVS*

>peptide 9 (31 aa)
MALERDVGLRMIGHQAIMDNMVWCGGRTSSL*

>peptide 10 (35 aa)
MFKRNYKGIPLYGTNCSSNCLINRHLFSFFVVDLL*

Sequence

>CNT0000501
GATTTTTATAGTATGTTTTATCAAGTTATAAATACGGAACAGAGAACAGCACTCTGGGAAGAAGGAAGTGGTTAGCAGCGAAACCCATCCAAGAAATATG
AGTATGGTTCCCAGTCCCAAACAAAAACAAGTTGTGCAATTGCAGCATATCCAGAACACCAAGAAGCTCTCTTACTCATTCTCACATTCCTACTCCCAAG
CCTAAGAGGTACCGGAGAGACCACCGGCATCATCCAAGGGATGAACATTCCGACGCGTGGCAGGCCAACTCGTCGACAGCCACCTCATCTTCGCCACTCT
CCAACGCATCGTCGACGAGTCCGACAACGTTTCCTATGCATACATGAGGAAAACTGGATTGGAAAGATCAGAAGGGCTTTTGAAGGATCTGAAATGGTTT
TAGGAAGAAGGAAATGTGATTCCGACTCCCGGTTCTCCAGGGCTTACATATGTCAAATATTTGGAGGAACTTGTGGAGATAAGCGCACCCTTGTTTCTCT
CCCATTTCTACAATATCTATTTTTCTCATATAGCTGCTGGTCAGGTCATTGGAAAGAAGGTAGGTTCTCACTCCCCTTTCCCCTGTATTAAAAATTGTCT
TATGTATGAGGGAATACTATGACATGTTCCCTTTTAATGTAGTTCCTTTCCCTGTCTATCCAATTGAAAAAATAATGCTTCAGCAAAATGCATTGTCGTT
TATTAAAAGAAAAATGGTTTTTCTCAGCTATCATTTTTCAATTAGAAAGACAAGAGACAAATAAAGGATATTAGGTCAGGTGACCTTGTGTGTGATGGAT
GTAATTAGTGGATAATTTAATAATCATTTGCTTGTATTTTCTCATTCAAAGTGAAAGGAGTGTTTGAAAGTTGATGACATAAAGCAGGCCACATAAGAGA
GATCTACTGCAGAATAGATCATTATCAAATCATAACTCAAATTTTAGATGTTGAAGTCATATAGTGGAGCTGAGGAGAAATTTGAAAGAACATTTTTATT
TATTAATAAAAACTACACGTGAAAGTACTAGTAGTTACTTTTAACTCTCCAATCTCTCTCACCTACTCAAATGCCCAGCACCTTAACTCACTCTTTATTT
CTCTCCTACATCTTGAAACTCACATTGATACAGAACTCCCATACAAGGAGCAGGCCTTTTATGGGCAAAACATATCTATACAATAATATTAGAAATTAAA
TCATAGGTGGTGACAATAACCAAGCTTGATCCAATTAGATTTATTGAAACTTGCCTGAATAGGACTGCACTAATTATCTTATAGGTTCTCAGCTTATCCA
ATTGTTTCTTCACTTCATTGCCACCTAATCTAGGATATTATAGAGCTGCTGCCAACTTGATATAATAATTGGTACTTTTAACATTAGATTTCGTCTAAAC
TTGAAATTCCATTTGAAAATGTTTGGAAAAGAAGACTCTGATTGCAAATATTATGTAGGTATTTAAGTATCAATTCCATATTCAGAATAATGGCCCTTGA
AAGGGATGTTGGACTTCGAATGATAGGCCATCAAGCCATTATGGACAATATGGTGTGGTGTGGAGGAAGGACCTCGTCCCTTTAATTTCAGCAGTTATAT
TGAATGGTAGCTCGGTATTGAATTGGACTCATAAAAATATGCTTATAGACTTCTACAAACTCATGCAACCTTGTAGAGTTGAATATGTATTTTAACTTTA
TGGTATTAATTGGTGTTGAAGTCCTCTAGTCAACATAGAATCAGAACTGAGGAATTCCTTATTTAAAGAATTCAATTATGTACTTATTGTGAAACCATCA
GGGTTTGCTTGTCCTTCTATTATTGTTGCTTTTAGGTTTCTGAAGAGCTCTTGGAAGGCAAGGAGTTGGAGTTTTACAAATGGGAAGGAGATGTACCTGA
ATTGTTGAAAGATGTTCATGATAAGCTCAACATGCTTTCAGAGCATTGGTCTCGAGATGACAAGAATAGATGTTTAAAAGAAACTACAAAGGCATTCCGT
TATATGGGACAAATTGTTCGTCTAATTGTCTCATAAATAGACATTTGTTCTCCTTTTTTGTTGTTGACCTTCTTTGATGGTAAGCTTTCTAATACTTCCT
TTAGCTTCTCTAATTTGTTGTTTTTAATTGATGGAGGAGGGGTCACCCCAACTTTGTAAAGTTATACAATTTTTTAGACAATGTATTCCATTCTATTGAG
AGAAATATTTGTTTGATTCACTTTTAATGATTAATCAGAGAAATGATACATCTCGTCCAGTGCTGCTGCTCTCAAGTATCCCACTTATTATACTTCATTG
CTTTCACAAATTGTGGCCATAGACTCATAGTATATGCCATGTAGGTTTGTCAGATATTGGGTTTGTTGGAGGGCTTTTAGTCAACTGTAACTTGGGAATC
ATCAACCATTTTTACTCAGCAGCAAATGTTTCTAATAATACACTAAATTGTTCCTTAATTATATGCCCCGATCAATTTAGTCCCTGATAGAAAATCAAAT
TTAGTCCCTCACTTTTATAACTATTATTCAATTTAGTCCTTGAAATTAACACCATCTATCATTTTAGTCATAATATTACAAAATCAATTTAGTCATTGAA
TTTGACAATTATTATCAATCCGGTCCCTAAATTTGACAATCTTATTGTTAAGGGATTATATTAAGAACTAATTTGACTGATGCACAACAAAGTTAGGAAC
TAATTTGACTGATGTGCACCAAATGTAAGCAACCAAAGATTAGTAGTTATCACTGTTTGGGATTAAATTGATAGATCCTTAACATTAGGGGCTAAAATGA
TTTATAGTTAATTTCAAGGACTATTTTTTTTCTTTCATAATTTGATGGTTTTCTCCAAATATTACTATTAACACGCCTCATGTTTATGCTAGTTTCAATG
TTTTGTAGCTGCCTGGCCAAGGTGCCTTACATCTGTGATAGATCTGCACAATCTTATTGATAAGGATATTAAGGGCATAGCACAACCGAGAAAGACACAA
TTTTTTTAATAGAGATATAGCTTAGCTGGAACTACTTCAGACTCATGATTCTTCAGTATTACACTGTTACTGAATACTGATGTTTTCCCTCGGATTGAGG
CCATAATTTCATACTTGCACTCTGTTCTGTGCCTATTAGTCAATACTTTTGAGATCAATGCTCGAATCTATTGTAATTTAAATACTCGTATCATTTTAGA
CATTCATTATGCTACCGTTAGGTGGGGACTTGGGAATCCGTGAAAATTTCCTCTGTAGACTGTACTGTGTAAAATTGGTAAGTTGTGTATACGAGGAATG
ACCTTTGCGGAGGTGCATTTTTTCTTTTCCCC