Detailed information on CNT0000530 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|K4BVL1|SPA_SOLLC, E-value = 4e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021682, E-value = 6e-15 (A. trichopoda)

Expression of CNT0000530

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)8.5848.21711.2983.95263.9891.815104.47285.25710.25217.10511.6788.9717.5055.9913.424leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0102030405060708090100110

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMLFVGSFIASILIFQLSSDTITIPYHTRKLN*

>peptide 2 (102 aa)
MTVLSPSLSRPKLQSSFLCCPLKYSKPTNRNIQPKPTSYPRIRALDLDQNTAKRENTQPCFPCNGSGARKYFPLHHFSYLKLGLYREIKFSMLTIIKAGH
NL*

>peptide 3 (34 aa)
MDLLFHIFTNLNFFPLKLLHFGQRNADFAWEMAM*

Sequence

>CNT0000530
TGGAATGCATGGTTCATGATAATAGATCCACGTGGAAGATGGGACAATGACTATGTGGTCGTTTAGTTCCTGCCACTAGTTTTTGGTTGGATGATGTTGT
TTGTTGGGAGTTTCATTGCCTCAATTCTCATTTTTCAGTTGAGTTCAGATACCATAACCATACCATACCATACCAGAAAATTAAACTGAAGTGAGAGAGA
GATGACAGTACTGTCTCCTTCTCTTTCTCGGCCTAAGTTGCAATCTTCCTTTCTTTGTTGCCCTCTCAAATATTCTAAGCCTACAAATAGAAATATTCAA
CCAAAACCCACTTCTTATCCACGCATTAGAGCTTTGGACCTTGATCAAAACACGGCTAAGCGAGAAAACACACAGCCCTGTTTCCCATGCAATGGATCTG
GCGCTCGTAAGTATTTTCCTCTTCATCATTTTTCATACTTAAAGCTTGGACTCTATAGGGAAATTAAATTTTCAATGTTGACCATTATTAAAGCAGGTCA
CAATTTGTAATTGTAATTGTAATTGTAGTAGAATGAGGATGCGTTCAGCTAAATAACTTTAAGTGTTGTGTTAATAAGTGTTCTTATCTTATAAGAGCTT
ATGTCAAAATTTTGATCATGAAACTTACTAATGTGGTCTGGTGATGGGTGTTAGAATTCAATTGCAAGGTGTGAGACTTGAGTCTCAAATTGGAAGTATG
AAATTCTAGTGTGGGGTGTATAAGGCTCTACAACTACAACAACTAGCTTTTTGTGGTGTGGTTCTTGCAAGATTGGTATGAGAGCATTTCAACATGTCTC
TCGGTGTGTGGACGGTGATGCCTGAAATAGTGACATTGAAAGTATGAGATTTATAATAATAATAATGTCTTGGCCTCTCCAACCATAACAACTAGCTTTT
GTGGTATAGTTCTCCCAAGGTTCTTATTAGTGGGGGATAGGGAAATTGGAATGAATAGCATCTGTGGGAATTGAACCTCCAAATCCAAATACAACAAAAT
AAAAGGTCGTGATGCTTATGAGGATGCCAAATTGAAACTATTTAATTTGTGCCAGACAATGAAGTAAGTCTTTTTTTGTGTGTGTGCTATGGCATTAAAA
TTAATTCTCACAGGCACTTTGTCTTCCCCATGAATGGCTGAAAATTTTCAATCAATTATAAGAATGGAAAAGGGAAACAATTCAACCGCACTGAATTAAT
AAGAATGAAGAAGAGAAGAAAACACCGCAGCAAGCCATGGATCTGCTATTTCATATATTTACAAATTTGAACTTCTTTCCTTTGAAATTGTTACACTTTG
GCCAGAGAAATGCAGATTTTGCTTGGGAAATGGCAATGTGACAGTTGAACTTGGTGGAGGTGAGGAGGAGGTGTCTCGATGCATAAATTGTGACGGTGTT
GGTTCATTGACATGCACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGACCGCAGAGAATTCAAAGATGATGACTGAGGCAAGCTAAGAATAA
GTGGTGCCGATTTTGTATCCAAGTATGAGGTTATTGTACTCGTGTAATTTCTTTGATCTGTGTACACACCTAATACAACTGTCAAAATCATGTTGATGCT
TTCATTTGGTTTACATTTCAATCGATGATCATATGATATTAGGCCACTCACTTTCGTTGCCTATGTGTGTAAAAATTTGACGTTTTCTAGGCATTAATTT
ATTCAATTGTTCAATGTCTCCTGTTGTAAGAATTTGGACAGGTCTTGTCTTTTGTCTGTGGTTTATGTTTATACTATGTTAAACCTTAGCAAACTATACT
TTTTTTTAAAAGAACTCAGGATAGTTCATCACTTGCGTTAAACATGATTTTTTTTGGCAGTAGAAGAGGCCAGCTTGTACCTTGAGCTTATAAGTTGATG
TTAGTTTTCTATTATCTTATAATTCAATGTAATTTAAACATTGTACTATCAACACATTCGATAAAAATTTCGT