Detailed information on CNT0000534 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q147G5|CCA22_ARATH, E-value = 2e-51

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000534

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.6837.1668.5212.0722.1680.3890.4570.42812.24614.37214.52715.41414.09512.9188.824leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011121314151617

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MEHYTNYKVSELKTTVLALADLQHDMKGCSLNSIREKYKQQKFRSVANLSPKPVQSLFKAQV*

>peptide 2 (77 aa)
MESEVLNLLHFQLSVPTTKTFLRRFILASQSSYKLLAVSTFLDSCICCITRQMDPQPIRASMEFNHGTLYELQSVRA*

Sequence

>CNT0000534
TTTGACTTGTATGTGTTTGTTCATTAACAGATTCCACATGAAAGTATGAAGAGATTTGTGCTCCTCGGGTGGAAGAATTTTGCTTCATCACAGATAATAC
GTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAGTTATCTGTTCCCACCACAAAAACATTTCTCAGGAGGTTC
ATCCTAGCATCACAATCTTCTTACAAGCTTCTTGCAGTTTCTACCTTCCTTGATAGCTGCATCTGCTGTATTACTCGCCAGATGGACCCTCAACCAATCA
GAGCATCCATGGAATTCAACCATGGAACACTATACGAATTACAAAGTGTCAGAGCTTAAAACTACCGTCCTTGCACTGGCAGATTTGCAACATGATATGA
AAGGCTGTTCTCTGAATTCTATACGCGAAAAATATAAACAGCAGAAGTTCAGGAGTGTGGCAAATTTGTCTCCGAAACCGGTGCAGTCACTTTTCAAGGC
TCAAGTATAAAACTGTAAATGATGCATCTATGAAGACTAAATATTGACTTTCAGAATTTCTGATACTGGAAAGGTGTATTATCTTTGGTTGTAATTATTT
GGCCATTCTAATTATTGTTAATTCCCAATCACCGCCTGATCAGTAGTTGTAACTTGTAGGATGGTACCAAGCTCTGGTACTTCTAGATCTTGTAACATGA
AATTGTTACATCATGATGATTGATACAATTAAAGCTGAGAATTATAGTACTTTGGCATCTGTTTTGGACTCCATTTTCAGGTAGCCGTTAGGCTGCTATG
CAAGTGCTTCATGATTACTTTTATATCGTATCAACCATCTGTGTGTAATAAAAAATTGCCGTGAAATTGGTGTAGTTTTACTTCTTTATCAGGATCTGAA
GATCGTAGCTAAAAG