Detailed information on CNT0000536 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000536

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000.39000.08401.3091.1870.6831.1611.2890.2440.198leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.4

Peptides detected in this lncRNA

>peptide 1 (69 aa)
HFFKETKVVMKRCPSSCVFLSVSFPKKHQILYTFIYSLSLSLQCFSISNAKRSHLTITISTMTPQKGSI*

>peptide 2 (30 aa)
MKIQPLQNKIATSELKILTLQKQTVKRAFLL

>peptide 3 (29 aa)
MYMHQQLQHLVSACLQHSSLSFHYTTKLQ*

>peptide 4 (38 aa)
MPSTLITVISLHNKTTINSTVHHVSKPDITHINIFRLI*

Sequence

>CNT0000536
TTCACTTCTTTAAAGAGACCAAGGTTGTCATGAAACGATGCCCAAGTAGCTGTGTCTTTCTCTCAGTTTCATTTCCCAAGAAACACCAGATACTCTATAC
ATTTATTTACTCTCTCTCTCTCTCCCTACAATGCTTTTCAATTTCAAATGCTAAAAGATCTCATCTCACTATTACTATTTCTACTATGACTCCACAAAAA
GGCAGCATATGAAGCTGATATTGCTTATCCAACTTTTCCAGAGATGGTTTCTGCATTTTCAACAACTTTAGAAGCTCCATAAATACATTACACTAAAACA
CACATATCAGACACATAATAATAATAATAATAGAATAGAAGAAGAGAAGCTCTACTTTTCTCTTTCTCTTTTTCCAGGTTTAATTATGCATGCAGCTAGA
TGCACACATCTGAGTCGTCATGATAATGGAAGCTGGCAATGACATGGTGTGATCATAGATCATAATCATATAGTATCTGTTTCTCTAGCTAGCAAGAGCG
ACATAGACAGACACATAGATCATAATCCCTAGCTAGCTTCTCCTGATTCTCACTTCTTCTCGTTAACTGTTCCAGCACATCTCTTATTTCATTTCTCTTT
CACATGTATATGCATCAGCAACTTCAGCATCTAGTGAGTGCATGCCTTCAACACTCATCACTGTCATTTCACTACACAACAAAACTACAATAAATTCAAC
AGTGCATCATGTTTCGAAACCTGACATCACACACATAAATATTTTTAGACTCATTTGAAGGTGTATGTTGTATGATAATTAATTTAATAACTCATTAAAT
ACATATTTATTACTTGCTTTACTGGGTAACTGTTAATTTACCTGAAGTACATTCTTTCAGATGTTGATGAAAATGATGGCAAGTCTTTTTCCCAAGTAAA
ATTATGAAGTTGGCTTCCCTATAATTTTCACCGGCCTGAAAACAGGTTAATTGACAGAAAGCTGAAACATTATTCAAAGCTGAAAGGACTTTAGAAGAGG
GATGTTAGAAAGACCTAAGAGGCATAGCAGCTAGTTGCAGATAAAGAAAAGAATTTCACATATGATAGGTTTTCACTATTGATGCTTTCATTCAGCTTTC
TTGTCCACGTGAAATAAACATTCCCGCAGGTCTGAGGGCCTGTGATTAGCCAACTTATTTGTTAATAATATATTTTCATAGGTATCTTATCTCCCTAAAA
TCTTAATCTTAAATTAATACGACACCAGAAAACTAGACAGATTTGCTTTGTGCCGGTGAACATGCTTCTCTCTCTCTCTTGAGTGAATGTATGAGAGAGA
AAAATAGGGAAACACAAAGAAGCTAGAAGTCATTTTGAAAAGATAACCGTTTGTTTAAAAAATATTATTACATCCAAAAATTAATAGATTTTCAAGCATG
GACTAATTCTTCATAGAAGTGCCTTCAAATTAATGATGAAAACTAAAACTTTTCAATTTTCTCTATTTTAGCCACACACACATATGTAAACAAATTGATT
CATTCATCACTAAAGTTCTAGCTTGGGATTTGGGAGAAGGTAGCATATTCACACGCGTAATATAAACGAAGGTAATGAAAATACAACCTTTACAAAACAA
GATTGCCACCAGTGAGTTGAAAATTCTGACCCTGCAAAAACAAACTGTAAAAAGAGCTTTTTTGTTG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G20986.1 Uncharacterized protein protein coding CNT0000536 2055 849 CDS_UTR Trans
GLYMA01G20986.2 Uncharacterized protein protein coding CNT0000536 761 331 CDS Trans
GLYMA01G20986.2 Uncharacterized protein protein coding CNT0000536 935 367 CDS_UTR Trans
GLYMA04G38441.1 Uncharacterized protein protein coding CNT0000536 168 79 CDS Trans
GLYMA05G32980.1 Uncharacterized protein protein coding CNT0000536 2112 778 CDS_UTR Cis
GLYMA05G32986.1 Uncharacterized protein protein coding CNT0000536 4472 1667 CDS_UTR Cis