Detailed information on CNT0000537 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000537

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4560000002.60400000.18300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MRTLLLSRDKILLIAKFGTILQEIIVFQVTKNDITSGGIFYIMFFNIFCVKKKHTLLTQEESHMKTLHSIHHEQKP*

Sequence

>CNT0000537
CTCCTGTTCTAGATATTCACACAAGTCTAGCACAACACGAGCATGAAGCACCATATAAAGCAGGCCCTTACACCCTTCCTGCATATTGATTAAACTGGGA
AGTTACATCAATCACATAATTTATGGATAAAATTGTATCTCATTCACAAGTTCATGCTTGCATTAGTCACTGCTAAGGAGATACTTCTGTATTTTGCTGA
CAGCGGAAGGTGAAGGTAAAATAATGGTTGGTACATAATAGAGTGACCAGCAAACAATAAACAGGGTATTCTCATTATTGACATAACTCCATACCTGGAG
AATGCGAACTTTATTGTTATCTCGTGATAAAATCTTACTGATTGCTAAATTTGGAACTATCCTGCAAGAAATTATTGTTTTTCAGGTTACGAAAAATGAT
ATAACATCTGGAGGAATCTTTTATATTATGTTTTTCAATATATTTTGTGTAAAGAAGAAGCACACACTACTTACTCAGGAAGAGTCTCATATGAAGACAT
TACATTCCATACATCACGAACAGAAGCCTTAACTGTTATGGTTGCAAAAACGCAGCGATGAACACCTCCATTTTCCTTCACATGAAAACAATTTTATAGG
TAACTTTTATCACAAATTTAGCTCGTTCTCAGAATTAAGGCCAACACATAAC

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G38450.1 Uncharacterized protein protein coding CNT0000537 311 364 CDS Trans
GLYMA04G38450.1 Uncharacterized protein protein coding CNT0000537 263 108 CDS Trans
GLYMA05G32950.1 Uncharacterized protein protein coding CNT0000537 1762 652 CDS Cis
GLYMA05G32950.2 Uncharacterized protein protein coding CNT0000537 1762 652 CDS Cis
GLYMA05G32950.3 Uncharacterized protein protein coding CNT0000537 1762 652 CDS Cis
GLYMA05G32950.4 Uncharacterized protein protein coding CNT0000537 1762 652 CDS Cis
GLYMA06G16600.1 Uncharacterized protein protein coding CNT0000537 275 362 CDS Trans
GLYMA06G16600.1 Uncharacterized protein protein coding CNT0000537 237 108 CDS Trans
GLYMA06G16600.2 Uncharacterized protein protein coding CNT0000537 275 362 CDS Trans
GLYMA06G16600.2 Uncharacterized protein protein coding CNT0000537 237 108 CDS Trans
GLYMA08G00580.1 Uncharacterized protein protein coding CNT0000537 1225 654 CDS Trans
GLYMA08G00580.2 Uncharacterized protein protein coding CNT0000537 1225 654 CDS Trans