Detailed information on CNT0000541 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q948P6|FRI3_SOYBN, E-value = 3e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000541

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.770.4120.49100.16300.4010.150.2510.7370.2191.0350.2060.470leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.1

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MVPFSNGPNVVIDAYAIVASVNFILREAFFFFLYSYWVHNYFSILMVFFFFSFFFLCVMLFSKLLKPISSLLILCKVNYL*

>peptide 2 (89 aa)
MEVAMELALLLEKLTNEKLLNLHSVASKSNDAQLSDFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAFHFRCI*

>peptide 3 (38 aa)
MKPDPETYNWVIQAYTRAESYDSINAMDPKSWKILQLL*

>peptide 4 (34 aa)
MKSCLTCTVLPQRAMMRNCQILLKASFWVNRWKP*

>peptide 5 (48 aa)
KYHSSNFMDFSPAKKQTLTSYNEKRQSYQPLESLFTKDQGANSFLVIK*

>peptide 6 (29 aa)
MEDPTTVVIETDFQWCISQSDPTNIIGTT*

Sequence

>CNT0000541
AAATATCATTCAAGTAATTTTATGGATTTTTCTCCAGCAAAAAAGCAAACTTTGACTAGTTATAATGAAAAAAGGCAGTCATACCAACCACTGGAGAGTT
TGTTTACCAAGGATCAAGGGGCCAACAGTTTTCTAGTGATTAAGTAATTACATAAGGAAGCTGAAGAGCTATGGAAGTAGCAATGGAACTTGCCCTGTTG
TTGGAGAAGCTGACAAATGAAAAGTTGCTTAACTTGCACAGTGTTGCCTCAAAGAGCAATGATGCGCAATTGTCAGATTTTATTGAAAGCGAGTTTTTGG
GTGAACAGGTGGAAGCCATAAAAAAAATCTCTGAATACGTTGCTCAACTTAGAAGAGTTGGAAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTACT
CCATGAGGAAGGAGTAGCATTTCACTTCAGGTGTATTTAACTTGCCAGTATTCAAGCATTTCACTTCTATACACAAACTACAATTAAAAGGAAAAGTGTA
TTTTTATGGTTACCGCTCGATCTTTTTACTTCACCTAAAAGATTTCTTTATACCAAAAGCACTTTGGGCTCTTGTGAATAAATCTTCTTCAAACGTGCAG
TCATAAATAACTTTTCAAGTATTATAATTTTTAATCTAAACTGAAACATGGTATAACACTTCTATCTCATTCAATGTTGTACTCAAGCATCCCTGTGCTG
CAATACTTAGGTAATGAGAACTGATTTGGTTTACTTGTTCAACTGATTTGATTAGCATTCAATTGATACTTTATATGTTTTCTTTCTTCGGAAAAGAAAA
GCATGATGACTGTTTAGGATATATTTGATGTATTGAGCCACCTTTATATTCTAACTTCATACATAATCTTAGAAAAACCAGCTGCTTAGTCGCTTAGATG
ACTTCATGGTTCCCTTCTCCAATGGGCCTAATGTGGTCATTGATGCATATGCCATAGTTGCATCTGTCAACTTCATTTTAAGGGAAGCTTTTTTCTTTTT
CTTATACTCTTACTGGGTTCACAATTATTTTTCAATTCTCATGGTATTTTTCTTTTTTTCATTTTTTTTTCTGTGTGTGATGCTCTTTTCTAAATTGTTA
AAGCCTATATCTTCATTATTAATTCTATGTAAGGTAAATTATCTATAATTTGTTACATAACAGATTACATGAAGCCTGATCCAGAGACATACAATTGGGT
TATTCAAGCTTATACTAGAGCTGAATCTTATGACAGTATTAATGCCATGGACCCTAAATCATGGAAGATCCTACAACTGTTGTGATTGAGACAGATTTTC
AATGGTGTATTTCTCAAAGTGACCCAACTAATATTATAGGGACTACATAACAACACCTTGCATATTCAGGGAGTATTGATTAAAATGGAGTTTACTCATT
TCTCAGTGGAAAATGCAAGGATCATTCATGAGTGAACATAACATGTGAACGATGAAAATAGAATGTATGCAATTGGCAGAATAAAAGCATGCTAAACGAA
GATGTATGATAATGCAATGACTCATGCAAATGCAATGCATGAATATGATAAATGATAAATGATATGTTCATTACGATGCCATGAAGAGATGTATGATGCG
ATCAAGGAATAAGCCAAAGTGAGTTTGCTATCTGCCTCCCTTAATTTAGGAACCTAATGGAAAGGATCCAAAAGTCCCTTTCTAGTGACAACTCCCAAGG
GCTTCTAGAGATATCATTCTCTTAGGTAATACATTG