Detailed information on CNT0000547 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000547

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000000.2530000.230000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.020.040.060.080.10.120.140.160.180.20.220.240.260.28

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SIYVCQEASSLMSASQSVLINQIAANTAVYSKKNTKKNSKHILLK*

>peptide 2 (31 aa)
MHPRLEQVRVLEVLSILGYLAEGMLFVDLKA*

Sequence

>CNT0000547
TCCATATATGTTTGTCAAGAGGCAAGTTCTCTCATGTCTGCTTCTCAAAGTGTATTGATAAATCAAATTGCAGCTAACACAGCTGTTTATTCGAAGAAAA
ATACAAAAAAAAACAGCAAACACATTCTATTGAAATGAATTGCATGACATCCAAAGGAAAATAGAATGTCTGCAAAAATAAGTCTTACCCCATAACTTGT
CAAAAGTCGCAGAAATTCTCTCAATCAGACAGATGTGGTGACTTAAGGAAGAGTGCCTTTTGGAACCATAAGAAGACCACCTGTTTCATGCTTTTACCAT
TCAAGTGAGTGATGTAGAAGATGCACCCCCGGCTTGAACAAGTGCGAGTGCTGGAAGTTTTGTCAATTCTGGGCTACCTCGCAGAAGGGATGCTCTTTGT
GGATTTGAAAGCATGAGTTGCTGCATATCTTTTGTAAGTGCGCTGAAGACTGCCTGAAGATCTCCCATTAGTTTCTGACAAGTTACCGTGGAATCAATAC
CTCCATTTCCAGGTTGCTGCAGCTGATAATTGCATTTGACAGATATAAAA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G07970.1 Uncharacterized protein protein coding CNT0000547 722 250 CDS_UTR Cis
GLYMA17G13030.1 Uncharacterized protein protein coding CNT0000547 1038 547 CDS_UTR Trans
GLYMA17G13030.2 Uncharacterized protein protein coding CNT0000547 1038 547 CDS_UTR Trans