Detailed information on CNT0000549 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93ZB1|LOL1_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000549

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5640.090.27701.5052.2951.3741.7840.8831.3240.8640.9440.54400.125leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLSFSAKLYTENKALSPIFFSSWKISKLK*

>peptide 2 (68 aa)
MRNWTISKPYHQLSQIHTPPKSESERNLTQKSSISNSPFLLLANQKVELFSFVFSHVSFAFSFRILSK*

>peptide 3 (31 aa)
MSALHSVLEFCPNDEKEPRIQISNHFITTKQ*

>peptide 4 (36 aa)
QQEHCTLVAPRMYMSKVWQPPHTNWAISVPVTHECF*

Sequence

>CNT0000549
CAACAAGAACATTGCACACTTGTCGCGCCCCGGATGTACATGAGTAAAGTATGGCAACCTCCACATACTAACTGGGCCATTTCTGTGCCTGTCACACACG
AGTGTTTCTGATTTATCTGCCTCATGATCAGTTGATTTGAAATCACAGGTAGAAATTGAACTTTCAAATAACCTACACAATTATATAGTGAGGAGAAAAA
ACTGCATCATACCAGGAGGTGGTACTGCTGTGACAGCATTGCAAACAGCACAGCACACAGAGGTGGCTCCAACTGGGAACACTAGAAGGTTTCTGCACCC
AGAACAGACAAGTTGACTCTGTACACCTAGCAGTCATGAAATAATTTTAAGTATCAAATAAATGGCCATAACATGCTAAAGGTTCTAGCATTCAATATCT
TAAAAATTGGTTCAATTTTCAAATGTTAAGCCAGACCGGATGAGAAATTGGACAATTTCAAAACCATATCACCAGCTATCTCAAATCCACACTCCACCCA
AATCAGAGTCTGAAAGGAATCTCACTCAAAAATCTTCCATCTCCAATTCACCGTTTCTCCTTTTAGCCAATCAGAAAGTGGAATTGTTTAGTTTTGTTTT
TAGTCATGTCAGCTTTGCATTCAGTTTTAGAATTTTGTCCAAATGATGAAAAAGAACCAAGAATTCAAATCTCCAACCATTTCATCACCACAAAGCAATG
AGATTCTTTTTGATTCTTAAGAATCAAAGATAGACACCAAGGGATTTGCAACAACTCACACATCATGCTCAACCAACTAAGCTAGACCCCTTTGGAACCG
TAAAGCAATGAGATGATGGCAAGATTTCTTGGCAATCAATAGAGAAGAGAGAAAGGCAGATATGATACCATTAGCTGGTGGTGTATATGGAGCTGGTGGT
GTTGGGTATGGGGCAAGTGGAACTGGCATTATAAAGGGCTAAAAAATGTTGTTATCTTTCTCTGCCAAACTCTACACAGAGAACAAAGCACTTTCTCCCA
TTTTTTTCAGCTCCTGGAAAATAAGCAAATTAAAGTAAAGGCACAATCTGGGAGGAAAAAGAAAGTGATGCACATGGTGATGGAACAGAAAGGCATGAAC
ATGAAGTAGAGTGAGAAGGAAACCCGTGAAGAAGAGGGTGCCAGCAAATCAAATGGTAAAGCAGATGATAAAGTAAGAGTCAAAATGAGTTGCTTCTTCC
CCTTATGAATGAAACTAAAGGGGAGGATCCAGAAGGAATAAGAAAGACTAAGAGTTAAGGCCTTTCAGTGGAAGTTGTATTTATGTAATGTGGAAGGGGA
AAATACATTAGATTATAA

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G40720.2 Uncharacterized protein protein coding CNT0000549 336 326 CDS Trans
GLYMA01G40720.3 Uncharacterized protein protein coding CNT0000549 336 326 CDS Trans
GLYMA05G23710.1 Uncharacterized protein protein coding CNT0000549 1618 576 CDS Cis
GLYMA05G23710.1 Uncharacterized protein protein coding CNT0000549 1938 700 CDS_UTR Cis
GLYMA05G23710.2 Uncharacterized protein protein coding CNT0000549 1618 576 CDS Cis
GLYMA05G23710.2 Uncharacterized protein protein coding CNT0000549 1938 700 CDS_UTR Cis
GLYMA17G16600.2 Uncharacterized protein protein coding CNT0000549 1116 678 CDS_UTR Trans
GLYMA17G16600.2 Uncharacterized protein protein coding CNT0000549 1036 598 CDS Trans
GLYMA17G16600.3 Uncharacterized protein protein coding CNT0000549 1116 678 CDS_UTR Trans
GLYMA17G16600.3 Uncharacterized protein protein coding CNT0000549 1036 598 CDS Trans
GLYMA17G16600.4 Uncharacterized protein protein coding CNT0000549 1127 688 CDS_UTR Trans
GLYMA17G16600.4 Uncharacterized protein protein coding CNT0000549 1036 598 CDS Trans