Detailed information on CNT0000550 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B6TYV8|CNR2_MAIZE, E-value = 9e-34

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000550

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFCSEIENNILTCGSLVNNFCNSAKGNTWTPTRHA

>peptide 2 (29 aa)
MTQQISVYRAPLAPHAAANNNHSHEKIKY*

Sequence

>CNT0000550
TAATGAGTGCATACCAATAATCATGTCAAATCCACGGTGTTGAAGCTCACGATATTCTTGACAGAGGGCGCAGGGCTCGCAGAAGCAATGAATCAAGCAA
TCCGAACAACCATTTCCCTTTAGACCATACTGTCGTCTCATCTTGGGGCGGTAGAAGCAAGAGTATAGGCAGCCACAGCCAATGACACAGCAAATCAGCG
TATACAGAGCCCCACTAGCACCACATGCTGCAGCAAATAATAATCACTCTCATGAAAAAATCAAATATTAAGTAATTCTATGTATGTTCTGTTCTGAGAT
AGAAAACAATATTCTTACATGTGGATCCCTTGTCAACAATTTCTGCAACTCGGCCAAAGGTAACACATGGACACCAACACGTCATGCAAC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G34870.2 Uncharacterized protein protein coding CNT0000550 1114 390 CDS Cis
GLYMA05G34870.3 Uncharacterized protein protein coding CNT0000550 1114 390 CDS_UTR Cis