Detailed information on CNT0000554 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q680K2|GPPL1_ARATH, E-value = 5e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000554

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLTTRKSGKPFLHMYNRINIMRMCYPIFL*

>peptide 2 (32 aa)
MKSYKIDLVVEVRREGGGCGFKSFPLTTNIYR*

>peptide 3 (33 aa)
CNPITLSSTTKQSFSDIPSFCNAHVNYAHSVSA*

Sequence

>CNT0000554
TGCAATCCAATAACACTATCCTCTACAACCAAGCAGTCTTTCTCTGATATACCTAGCTTCTGCAATGCTCATGTAAATTATGCTCACTCGGTTAGTGCAT
AAAAGAAATTTAAAACTTAATGTTTCAAAGTTTTTGATCATATTGTCATAATAAAACCTTGGAAGCTGTCACGTATATTGATGGGCTAGGCTTCTTTTCC
TTCACATCATCACCTGGAAGTTTAAATAAATGGACAGATGAAGAGTTATAAGATTGACTTGGTGGTTGAAGTGAGAAGAGAAGGGGGAGGTTGTGGGTTC
AAATCCTTCCCACTAACAACTAACATTTACCGATAAAAAAATAAAAATAAATGGACAGATAGATTTAAACTTAAATACCCAAAGTACTGCCACATAAAAA
TATCAATAAAATTTACAAGCAGAGTGGTGGATCGTGGATGTTAACAACTAGGAAAAGTGGAAAACCTTTTCTACACATGTATAATAGAATTAATATTATG
AGAATGTGTTATCCAATTTTCTTATAGGATGAAAAAATAAACAGATGCAAATAAATTTTGAGTTTTGATGCTTTAGAGGGCGCTGCAGCATGGTGTAAGT
TTTGTTTCACAATACTTGAGCAGGAAACATGTCTCAAATGTTATATGACCAATAAAAGGATATATACCAGCAAGGAAGCAATCAAGGCCTTGAAAGCGCT
CCTACAACAGAGAAAATAACTGGGTTGAGTGCAAATTAATAAATAATTTCTACTCCCAATAGTGAGAATGGGCTTACAATTCCTATAAGGTTTTCAAGAC
AGAGAATAACTGAACTTTTAGTCGCTGCGGAGCAAACAGCTAGCTTTTTCCCCTGCAACAACAATTTGGCAAAAAGTG

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G31070.2 Uncharacterized protein protein coding CNT0000554 2366 878 CDS Cis
GLYMA05G31070.3 Uncharacterized protein protein coding CNT0000554 2366 878 CDS Cis
GLYMA08G14280.1 Uncharacterized protein protein coding CNT0000554 1641 899 CDS Trans
GLYMA08G14280.4 Uncharacterized protein protein coding CNT0000554 1641 899 CDS Trans
GLYMA08G14280.5 Uncharacterized protein protein coding CNT0000554 1641 899 CDS Trans
GLYMA08G14280.6 Uncharacterized protein protein coding CNT0000554 1641 899 CDS Trans
GLYMA08G14280.7 Uncharacterized protein protein coding CNT0000554 1641 899 CDS Trans