Detailed information on CNT0000557 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LEB6|Y5185_ARATH, E-value = 4e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000557

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6892.7132.60400.3911.2271.0570.181.3052.7290.6981.8120.57600leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (124 aa)
FLGKNQKPQTHLVVGDAAAGEDPRPVFGSCDMNLRSLVFAESEKLRLDHIYYLILGLNFNSLYCLTLSLTPSTFFFSLAHSTPFLSQSPLNHHHCDSRGD
SASTTDVPSTSFNKVFGICLRLEQ*

>peptide 2 (58 aa)
MLTYLHEEIKPKVVHRDIKSSNILIDDDFNAKIFDFGLAKLLGVGKSHITTRVMGTLG*

>peptide 3 (59 aa)
MNCTLSIPDQSDNCLFGAKGYTLFLRSSAYFEPRLNKFGDFNSVFPIILYIVNLCKLLM*

>peptide 4 (41 aa)
MGSVDDQIDFIMGDFFLLTPKLKVLHKLSQVALLQTDSRKR*

Sequence

>CNT0000557
TCTTTTTAGGGAAAAACCAAAAGCCCCAAACTCATTTGGTGGTTGGAGACGCGGCTGCAGGAGAGGATCCGCGTCCAGTATTTGGTAGTTGTGATATGAA
TTTGAGAAGCCTAGTGTTTGCAGAGTCTGAAAAGCTGAGATTGGATCACATATATTATCTGATTCTAGGGTTAAATTTTAATTCACTCTACTGTCTGACT
CTCTCGCTCACGCCTAGCACGTTTTTTTTTTCTCTTGCTCACTCTACTCCGTTCCTTTCCCAATCGCCACTCAACCATCACCATTGCGACTCACGAGGAG
ACTCAGCCTCCACGACCGACGTTCCCTCGACATCCTTCAACAAAGTTTTCGGCATTTGTTTGAGGCTGGAGCAATGAGGCTTGGGAGGGATGTTTTGGTT
CTAACACAGACAACTAATTCCAGATCACTAGCTTTTCTTTGACAATCATTGAATGAAGGCAAGATGCTAACTTACTTGCACGAGGAAATTAAGCCAAAAG
TTGTACATCGAGATATTAAATCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATTTGACTTTGGGCTGGCAAAGTTATTGGGTGTTGGAAA
AAGTCATATCACAACTCGAGTAATGGGTACTCTTGGGTAATCTAATCATGAATTGCACACTGAGCATACCAGATCAATCTGACAATTGCTTATTTGGTGC
CAAGGGCTACACTCTCTTCTTAAGGTCAAGTGCTTACTTTGAACCCAGGCTTAACAAATTTGGAGATTTTAATTCAGTTTTTCCAATTATCCTTTATATT
GTGAATCTGTGTAAGCTTCTGATGTAGTTGCAGGTTTCTTGTAGGACCTTAGATGCTTATACCTGAAAACATAGAGAATAAAGAGTTTTGAGAAAAAATG
AAATGGAGGCCACAAAGGCCGAAAAGATGATTACACATAGGGAAGCGATCTTTTCCTGCCCCAAAGGAACTTGGTTTGTCATAGAGTAGGAGGAAAAGCT
TGCTGCAAAAGCATCCAAGGTGCACACTACAATGGGAAGCCAAATATCTATTCTTATGAGGGAGCAACTGTAAACGATCTAAACTGTATAAAGCTACTAC
TTATGGGGTCGGTGGATGATCAAATTGACTTCATAATGGGTGATTTCTTCCTCTTGACACCAAAGTTAAAGGTACTTCATAAGCTATCACAAGTTGCACT
CCTTCAAACAGATAGTAGAAAAAGATAGGTTTAATTATAAGATTGAGGAAAAATAAAAAAGTACCTAGACGGGTGTAAGGTGGTGCATGCAATGAGATAC
TAATTGAGTGACAATATTTTATTTCTATTTTCTCTAAAACCTTGTGCTTTGGCAGATTGCTTGAACTTTTGCTTTCTCCTTTGTTTATGGAAGCATTAAG
CTCAAGTACCTCAAGGTATTTTAATGAATCCCTTGTACATTTAAAATGGA