Detailed information on CNT0000574 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000574

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.1951.5072.2400.1631.8410.961.2010.6692.5410.5822.0660.9610.4680.189leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTSSVLKRLVYSNSIWQRFLRSPINIPLSLSVTESNLNFTGRVQVSRL*

>peptide 2 (64 aa)
MHTLASPETHRWLFPLNEMTSVFQGDMQGEQKVLVTSSCDHSIVCGGRVLLGNDWLRRTNTSRE*

Sequence

>CNT0000574
ATCTATTGTTACAGATAAAAAAACAATTTAAGATTATTTTTAGCTTCTAATTATTTTAAAAAGCTGAAAGAAACATAAAGGAAAGTAAAAATAAATCTGT
CAAAAAAATTGTAACAAACGAAGACTCCATAGCCAACTGCTTCAGCTACGTTTGCAATTTGGCGATGACATCATCCGTTCTGAAACGCCTCGTCTATTCC
AATTCCATTTGGCAACGCTTCTTAAGGTCACCAATCAACATCCCTCTTTCTCTCTCTGTTACTGAATCGAATTTAAACTTCACAGGGAGGGTTCAAGTTT
CTCGACTTTGATGCACACGCTTGCTTCTCCAGAAACTCACAGGTGGTTGTTTCCCCTTAATGAAATGACTTCAGTATTTCAAGGTGATATGCAAGGGGAG
CAAAAGGTTTTAGTTACCTCCAGCTGCGATCACTCCATTGTCTGTGGTGGAAGGGTCTTGTTAGGGAATGACTGGCTTAGGAGGACCAACACCTCCAGAG
AATAAGGAGAATTAGAGAAGAACAGAGTCAGAGGAATTTCCAGCTTTTTCATATCTCTGCTTTTGTTATTTACAGGAAGCATCAAGCAAGAAGATTTGAA
GATGAGCTGGCAATTCCATTTCCTTTGTCGCTATCCTCAGACGAAGTCATTCAATGGAGGAAAAGATGGTACCGTTTGACTATGGTCCCTTGGCTCAAGT
GGCAAATGAGGACATCGTGCTTTGAAGGCTACACTCTGTGGGCATGAAAAACCTGTAAATTTGATCTCAGTTGCCGGGCATGGTCCTTGCAGGAATTGCT
GCATCTAGCTCATGAAGAAACAATAACAAATTGTACCACACCATGCTCTGAAGGAAGATAATCTGGGGTA