Detailed information on CNT0000576 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000576

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.13.797.5834.3032.0643.32.3986.9197.5178.947.3789.52410.1229.1778.293leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.51010.511

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTVWRHLGYDFKHVEWGVKVYLWEFSILQLWYHSQYYIVGGKFIGLA*

>peptide 2 (29 aa)
STVFQLFFLSLSLWRMNHSLPLRSETHHF*

>peptide 3 (50 aa)
MLVMNLNYIKLSHCILLNFEFSLCQYLIRILLLDVFTDYECSLLYISLII*

>peptide 4 (91 aa)
LNCLSTLFSLSLSLANEPFSSSPIRNPSLLTPADLPLSTSLHTLHQSLPNFPSLIIPFLLFLSSHLSAIASLGFLRGDGFSNCIRPFNWIE*

Sequence

>CNT0000576
ACTCAACTGTCTTTCAACTCTTTTTTCTCTCTCTCTCTCTTTGGCGAATGAACCATTCTCTTCCTCTCCGATCCGAAACCCATCACTTCTAACACCTGCA
GATCTCCCTCTCTCAACCTCACTCCACACCTTACACCAAAGTCTCCCAAACTTTCCATCGCTTATTATTCCCTTTTTACTCTTTCTCTCTTCTCACCTTT
CTGCAATTGCTTCTCTAGGGTTTCTCCGAGGCGACGGATTTTCCAATTGTATCCGGCCTTTCAATTGGATTGAATGACTGTATGGCGGCACCTAGGCTAT
GACTTCAAGCATGTTGAGTGGGGAGTGAAGGTTTATCTTTGGGAGTTCTCAATCTTGCAATTGTGGTACCACAGCCAGTATTATATAGTAGGAGGAAAGT
TTATAGGACTGGCTTAATTGTTTGGCAAAGGCAGATACGGAGAGGACACTTGAGGAAAAGATGTTGTGGCTGATAGAGAGTCATGATCACGTAGTCAGGT
GATGTGGATGGAACCGAGCACCATGTTGACAATGCTCAAGTTGATCATTGACTCTTGGCTATTGTTTTAGTTTGATTATGTCATGTTAGTTATGAATTTA
AACTATATTAAACTTTCACATTGCATTTTATTAAACTTTGAATTTTCACTTTGTCAATATTTAATTAGAATTTTGTTATTAGATGTATTTACAGATTATG
AATGTTCACTTTTATATATAAGTTTGATTATATAGTTTAATTAAAAATTATATTT