Detailed information on CNT0000577 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000577

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.5252.5864.2122.2032.3052.6542.4553.1883.8485.6815.0645.0625.1813.5924.58leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKLRQHLMLSASFLIILYQNESVFLDDCSISHLLQGPSKFSLATYRVN*

>peptide 2 (49 aa)
MTVWRHLGYDFKHVEWGVKVYLWEFSILQLWYHRLEPTYSYIKQLGGWD*

>peptide 3 (29 aa)
STVFQLFFLSLSLWRMNHSLPLRSETHHF*

>peptide 4 (50 aa)
MLVMNLNYIKLSHCILLNFEFSLCQYLIRILLLDVFTDYECSLLYISLII*

>peptide 5 (91 aa)
LNCLSTLFSLSLSLANEPFSSSPIRNPSLLTPADLPLSTSLHTLHQSLPNFPSLIIPFLLFLSSHLSAIASLGFLRGDGFSNCIRPFNWIE*

Sequence

>CNT0000577
CTCAACTGTCTTTCAACTCTTTTTTCTCTCTCTCTCTCTTTGGCGAATGAACCATTCTCTTCCTCTCCGATCCGAAACCCATCACTTCTAACACCTGCAG
ATCTCCCTCTCTCAACCTCACTCCACACCTTACACCAAAGTCTCCCAAACTTTCCATCGCTTATTATTCCCTTTTTACTCTTTCTCTCTTCTCACCTTTC
TGCAATTGCTTCTCTAGGGTTTCTCCGAGGCGACGGATTTTCCAATTGTATCCGGCCTTTCAATTGGATTGAATGACTGTATGGCGGCACCTAGGCTATG
ACTTCAAGCATGTTGAGTGGGGAGTGAAGGTTTATCTTTGGGAGTTCTCAATCTTGCAATTGTGGTACCACAGGTTAGAACCCACTTACTCATATATTAA
ACAGCTTGGAGGTTGGGACTGACCTATTATGACGTTATCGTTCTCCAGAATACCTATTATGACGTTATCGTTCTCCAGAATATTAACAGCTTGAAAGTAC
AAAACCAAGAGTTTTAATTGTGAATTAAGAGGCATTTTTGCCTATTATTGTTGTTTGGTTGAGAAATAAAATTGATCATTTTTAAGATGTGCACTGCACA
ACTCATCATATAACTATAGGCTTTCCAATTTTCCCTGGTTCCTATTAGATCACTAAGCACGTGCTAGTCCTTCATAAGGTTTTTGGAAGCCATTATAAGA
ATTTTATAATCCTATCATATCATTACTAATGGCCTTAGCTGATGATAGATTCCATTTTTTGCTGGGTTTAATTAAAATACATTTAAACTAGTGTATTTTT
CCTTTCCTCTTGTACTATCCATAGTAATTTCTAAAATTAAATACATTCATTATGAAATATAAAAATGAAGTTGAGACAACATCTAATGCTTTCTGCCTCA
TTCCTTATTATTTTATATCAAAATGAATCAGTTTTTTTGGATGATTGTTCCATATCCCATTTATTGCAAGGACCTTCTAAATTTAGTTTAGCAACATATC
GAGTGAATTAGTGCCAATACATATTCCCTTCTAGCATTTAACTTGTTCATGTTAGATTGTGATATAGTAACATGTGCTATAATGTATCCTACAGCCAGTA
TTATATAGTAGGAGGAAAGTTTATAGGACTGGCTTAATTGTTTGGCAAAGGCAGATACGGAGAGGACACTTGAGGAAAAGATGTTGTGGCTGATAGAGAG
TCATGATCACGTAGTCAGGTGATGTGGATGGAACCGAGCACCATGTTGACAATGCTCAAGTTGATCATTGACTCTTGGCTATTGTTTTAGTTTGATTATG
TCATGTTAGTTATGAATTTAAACTATATTAAACTTTCACATTGCATTTTATTAAACTTTGAATTTTCACTTTGTCAATATTTAATTAGAATTTTGTTATT
AGATGTATTTACAGATTATGAATGTTCACTTTTATATATAAGTTTGATTATATAGTTTAATTAAAAATTATATTT