Detailed information on CNT0000592 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042278, E-value = 4e-06 (A. thaliana)

Expression of CNT0000592

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.2752.3070.7221.9470000000.214leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNCASHSFVLSILLSSPFSLPVSLPLYTNC*

>peptide 2 (40 aa)
MYACPIYCIHEQNQRLKTCNQIGHGPRNNVQYKFKKLKNQ*

>peptide 3 (32 aa)
MKGFKFNFCASAIHSVPIPLVQKLAFDLLHCL*

>peptide 4 (33 aa)
MMAIINLCILQLDVHCRCGCWTLQICLLMVRGG*

>peptide 5 (66 aa)
MYCNLLLGRRTTCNWKLWQGDCEENIWGPNSKLTMTYCRTYIYILNCSVFFQVNTPHSVLFTDLQW*

Sequence

>CNT0000592
CCATGTATGTAAGTTAAGTAAGGGGTGTGAGATTAAAATCTATGTGCATGCATATTTGACAAGTGGATTAACGTGGAGTACGTGAATGGGTTGTTAAGTT
ACATATATAAGGTGTCCTTTTTAGAGGGTGTTTTATCTCGTGAGAAGCGGTTACAACAAAATGAAGAGTACATGGAAAGTGTCATTGCATTTGTACTAGC
TAGCTGACTGATCTAGAGGAATATTATTTGGAGGCCCTTTTACCCATTCTTTTCGCATTTTTCCTATAAGTAGGTGCTCCTGCCCAGTGAGAAATCTAAC
ATCTCCCAAAGTTCCAAACTCGAATCTCTTCTCTTTTATCTCTCTTTGATGATCATCATCCCTTTCCTATCTCTATTTTTATGGGGAAAAGGTGAGACGG
GAGGCACTAGTTGGTAATTAAGGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCATATTATATAAAAAGCAGCTAGGGAACTCATGAATTGTG
CATCTCACTCCTTTGTGCTCTCTATACTTCTGTCATCACCCTTCAGCCTCCCTGTCTCACTACCCCTCTACACCAACTGTTAGTATATATCTAGTTACTG
GAGCTGGAATTCATATATAAATTAGTTTAATAAGCATGCTCATGCGTGTATAATATGATGTTCACAGGTTTTAAAAAAACTGTGAGTCCATGACTGCATC
GCTATTGCAATTGTAGCCACATCAACTGTATTTGTTAACGATTTTATGTAATATTAAAACGCAACAAAACTGCAGTGGCAGCCGCAGTTTGAAACTTTCT
TCTCATACCATATTCTCTGATAGATATTAATATTAATTTGCTTGTATATATGATGGCTATTATTAACCTTTGTATTTTGCAGTTAGACGTGCACTGCCGC
TGTGGCTGTTGGACACTACAAATCTGTTTGTTGATGGTACGAGGAGGTTAGAATGAAAGGGTTTAAGTTTAACTTTTGCGCAAGTGCAATTCATTCCGTA
CCGATACCTCTTGTTCAAAAGCTTGCATTTGATTTGCTACACTGCCTCTGAGATATAATTAGAGAGTGATCATAGACTCGTTATCATGATCACAATATGA
TTCTTAACAAGAAGAATGTACTGTAACTTGCTTCTTGGAAGAAGGACCACATGCAATTGGAAGTTGTGGCAAGGGGATTGTGAAGAAAATATATGGGGTC
CAAATTCCAAACTGACCATGACATATTGTAGGACATATATATATATACTTAATTGCTCAGTATTCTTTCAAGTCAATACCCCACACTCAGTCTTGTTCAC
TGACTTACAATGGTGATCTCTAGCTAGAGAGTGTGAATATATCATCAATAGATAAGAGCAACAATGTATTTTATGCAACAAAGTTATAAGGTTTAATGTA
TGCATGTCCTATTTACTGTATTCACGAACAAAACCAAAGGTTAAAAACATGTAATCAAATTGGTCATGGTCCAAGAAACAATGTTCAATATAAATTTAAA
AAACTAAAAAATCAATGATACTTTGACTTAGAGCAAGACAAAA