Detailed information on CNT0000606 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P33627|TBA6_MAIZE, E-value = 9e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000606

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.1910.7170.7320.3260.6391.3372.0230.720.7291.2241.0781.3160.53800.248leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.12.2

Peptides detected in this lncRNA

>peptide 1 (52 aa)
TSCAPPSSISKPPSSTKSAAAPAANSSIPNKEDAANNFARDHYTGNYLPGGA*

>peptide 2 (51 aa)
MLQPVKMMEDFRRLALENTRKNSETCGVLAGSLERDVVICVLPSSRKSLGW*

>peptide 3 (53 aa)
MSFTLVFFGAKRQWKIILKKTNLNDFFANLRTNEGFFFKKIRTKMPHLYNIEN*

>peptide 4 (33 aa)
MVIDESCIIGNYWYPRRFLNILVEMLLQSPMLL*

>peptide 5 (77 aa)
RPARRLRRSRSHRHRRSPLLLPPPTLPSRTRKMPPTTSPEITTPATIYREEHNVVDLYIILLRFLRDHELCWMSLNL*

>peptide 6 (54 aa)
HVLRAAFVDLEATVIDEVRCCSRRQLFHPEQGRCRQQLRQRSLHRQLSTGRSIM*

>peptide 7 (38 aa)
MVILTVICACNLGGSRKKGISYHNTYNPKQESTSDSVR*

Sequence

>CNT0000606
CACGTCCTGCGCGCCGCCTTCGTCGATCTCGAAGCCACCGTCATCGACGAAGTCCGCTGCTGCTCCCGCCGCCAACTCTTCCATCCCGAACAAGGAAGAT
GCCGCCAACAACTTCGCCAGAGATCACTACACCGGCAACTATCTACCGGGAGGAGCATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGA
GATCACGAGCTGTGTTGGATGAGCTTGAATCTTTGAAGCCCAAATTTAAACATCGGGTGGAAAAAATGAATGACTAGCATGTAAAAGCTCCATTGCCTGA
AGAAAATGGTTTCAATAAAGCTTTGCAAAGTTGAGTGAATTCATTATTGCAATGGCCGACTGTCAATAAACAGATCTGTTAGTCTACCCCCTCCAAATAA
GGAGAGTTTGACCAAACATGCATTTTTAAGACCAAATGGCCTTTGGGGCCAATGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCGAAGGCCAGGA
CCAGCTAAATCGTCTCATGATTCTGGACTTGATGCAACTACGTATCAACACCTACATATAGTAAACCTTTTCTAGTTTTCTAATTGAAGTGCGTGACATA
TATCTTGGATTTTCTAAGTCATTTATTGTCACTTGTTCTTATATGTGTTGGCTCTTTGAGTTCTTAACTTCTTATACTGGTTAAAAGTTATTATAATTTC
ACTTTATGTTGCAGCCTGTCAAAATGATGGAAGATTTTAGGAGATTAGCTTTGGAAAACACAAGGAAGAACTCGGAGACATGTGGTGTTCTTGCAGGGTC
CCTAGAAAGAGATGTTGTAATTTGTGTGCTTCCAAGTTCTAGAAAATCTCTTGGATGGTGATTTTAACAGTTATTTGTGCTTGCAATTTGGGTGGCTCTA
GAAAAAAAGGTATTTCATATCACAACACTTATAACCCAAAGCAAGAATCAACTTCAGACTCGGTAAGATAATGTCATATTTTTCTTTTTTAATTTTACAA
GCTATCATACTCTGTCTCAGTGTGTCTATTCCTTTGTTATTCCATGATTAAACAGCTTCATTTTTTACATAATCTTATTCCAACTATATCTTGACTGACA
AAATAAAACATTAGTATTGCTTTGAGGTCGTGGTGCATAGCTATGGTGATTGATGAATCTTGTATAATTGGTAATTATTGGTATCCGAGAAGATTTCTTA
ACATTTTAGTGGAAATGCTGCTTCAATCTCCAATGTTACTGTAAATTAAAATTATGAGCAATTATTTTTATAGCCAACTGCTTCTTTAGTCAATTTTAGT
GGAGTTATCCTTGGAAATTTTAATGATTGTGATGTTATAGATTTCTTGGTACTGACTACTCCAAATTAGTCCTTGAGATCTTATGTGTTTGGTGTTTCAG
TCCTCGAGATTTTAAAAATCCTTCATTAGTTTGACTTTGCAAAATGTCATTCACTTTAGTCTTCTTTGGTGCAAAACGACAATGGAAAATAATATTGAAA
AAGACTAATTTGAATGACTTTTTTGCAAACTTAAGGACCAACGAAGGTTTTTTTTTTAAAAAAATTAGAACTAAAATGCCCCATCTATACAATATTGAGA
ACTAATTTACAAGCTTACTCATATATTAATAGAATTAGCACATTATGAAGTACTCATTGGATTTAGGAGTTCAAAGGATTGTAATTTCCCATGGTTCATT
GATGTTTTTTTCTTCTACTGTCTGATGTTATTTTTTCATTTAGCAATAGTGCATCTAATTGAATTTTAATATCCAGTGTCAAACAAAACATTGAACGAAG
AAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTTGGTTGGATACATAATTCGAGACTTATATGGCATTCACGAATCACAAATCACAAATG
TTGATTTTTGGGACTACAATCAAATAAAATTTGTATATTCTTGTATTTATATCAAATTACTATTTAAGAAATGTATGTAAATTGTTAACATGTTAT