Detailed information on CNT0000612 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O22860|RL38_ARATH, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005664, E-value = 2e-31 (V. vinifera)
CNT0027478, E-value = 6e-19 (O. sativa)

Expression of CNT0000612

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRQQKDKQTHAAALSTSTGLEHSNLQATNGMHHITLKFIIPNTYSIR*

Sequence

>CNT0000612
TTTGAAACCCTCTTGTTCTATTCTAGGCAAACGGTTAACCACAGTACTAAATCATAATAAATAAAATAAACCACAAAATTATGGGCAATTCAATTAAATT
GTGCTCAAAATAAAACTTTCGCATTTTCATAGCAAATAAAAAACAAGCATATCCTCATAACAATTACCAAAATATAAAAGCAAGCCACAAAATCTAGAGC
ATGAGGCAACAAAAAGATAAACAAACGCACGCTGCCGCACTCAGCACCTCTACAGGTCTTGAACACTCAAACCTGCAAGCAACAAATGGCATGCATCACA
TAACACTAAAATTCATAATCCCAAATACATATAGCATACGATAGTGTTAAGAGGAACAGTAATAATAACTAACCGGGAGGAAGAGATTGCTTCAATTTAT
CGGCTTTCTCAGGATCAAAGACACAAAGCGTGTACAAATACTTGGAGCATCGAACCTTAAACTTAACGACATCCCTGCTCCTCTTGATTTTCACCGACCT
CGCATCCTTCCTCCGTGCCGTCAGAAGGAAATCCTTAATCTCGTGGATCTGCTTAGGCTGTATTGTGTCGTGCACACACACATAAAACTCAGAACATTAT
TCATCGTATTCCACACGAACAAACAAACATCGTATAAATCAAATCAAAGACGGAGAAAACGAAATAGTAGTTACCATTGTGGTTTGCGAGTTGTGAGCGA
CGGCGGCG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G27570.2 Uncharacterized protein protein coding CNT0000612 874 308 CDS Cis
GLYMA08G10540.1 Uncharacterized protein protein coding CNT0000612 829 565 CDS_UTR Trans