Detailed information on CNT0000620 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000620

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.993.1792.032.1660.47200000.3880.4220.9220.7961.3590leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Sequence

>CNT0000620
CCCTGCTCTCGTATATGTATTCAAGTGAAACTCTGACGTGACAAAAAGTCATAACTAAGCAAAACGAGATATTTTGCAGAAGGAAGCAGTTCTTATGCAT
ACTACACTTACAATGAGTTAAGCTTATTGGTTCCAAATTACAAACTAAGGAACTACTTCCCCATCTAGAAAACCAGTAAACTGATGAGGAAACCTTTGCA
CCTTTGCTTTCAGTTGTTTCAGTTCTCTTAAATCCTCCACCCATATACTGTAACTTGAATTCTTAAAGAGAACATCACTAGACACTTCCTTATTTTCAAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G32756.1 Uncharacterized protein protein coding CNT0000620 426 156 CDS Cis