Detailed information on CNT0000625 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9XF61|PDI_DATGL, E-value = 8e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000625

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000.78100.107001.8352.5861.9773.0731.9362.9371.287leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.25

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MGSSEMDKTPKEKESKTPPPPPTSQEQSSTTSSGTINPEWPGFQAYSPIAPHGFLASSPQAHPYMWGVQVEALRFC*

>peptide 2 (36 aa)
MHINFSFFLCFWSLCCCPFFVERRSFDFYFLLLMFS*

>peptide 3 (31 aa)
MELVERGFPLIYFLTLHKVVQIECLKFCNTF*

>peptide 4 (49 aa)
MVVCLVFLMFSWMFAFSFSCMFAFRFSMLYILSYRINVIVVCFMFFLPY*

>peptide 5 (40 aa)
MHVFFSFSCILTFRFFCVFGPFAVVHFLLSGEVLTFTSFY*

Sequence

>CNT0000625
TCCCACGTGCCTAATTTTTCAGCCTTCTCCCGTCATGTTGTTTGCACCTGCTCCCCTTGATCTCTTCCATCTTTACTTTTGACGGCAAACGAGGTTTTGT
TTTTCTTTCCCTGTTGTTCTCATGCATGTTTTCTTTTCATTCTCATGCATATTAACTTTTCGTTTTTTCTGTGTTTTTGGTCCCTTTGCTGTTGTCCATT
TTTTGTTGAGCGGAGAAGTTTTGACTTTTACTTCCTTTTATTGATGTTTTCCTAATAAGTCATGGTTGTTTGTTTGGTGTTTTTGATGTTCTCATGGATG
TTTGCTTTTTCGTTCTCATGCATGTTTGCTTTTCGTTTCTCAATGTTATACATTTTAAGTTATAGAATCAATGTTATAGTTGTTTGTTTCATGTTTTTCC
TTCCTTACTGATTTTTCCCGCTTTGTTTTTGTTTTCTTTCTGATTTTCCCGCTTGCAAGGTGGTCCACGAAAAAACATCCAGCAGGTTCACAGATCTGTG
AGGTGTGGGAGAACAACTAGCCACTGTAAGAACCTTGCTCTGGAGTATGAGAAAGCTGCTTCTATCTCGAGTAGTCATGATCCTCCTATTGTTTTGGCTA
AAGTAGATGCCAATGAGGAGAAGAACAGGAGGATGGTTTAATGTATATTTTTAAGATACTGATATAAAAGTATGGGCAGCAGTGAGATGGATAAAACTCC
AAAAGAGAAGGAGTCAAAGACACCGCCACCACCACCTACGTCACAGGAGCAGTCTTCGACCACCAGCAGTGGAACAATTAATCCTGAGTGGCCTGGCTTT
CAGGCATATTCTCCTATAGCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGGTAGAAGCTCTTAGATTTTGCT
GAACTCAAGGACAACTCTATATCTTTCTTTGACATTGAGAAACATGAAACTGCCATTTTCCGTTGGTCTAGAGCTACAACCAGAGCTGCCAAGGAATTGA
ATAGAGCTTAACAAAATTGATAGGTTATTTTGCCCTGGAATGGAATTGGTGGAAAGGGGCTTCCCATTGATATATTTTTTGACTCTGCATAAGGTTGTAC
AAATAGAATGCCTGAAATTTTGTAATACATTCTGAAGAAACTCACTCTGTCTCAACAAGTGAGCTGCAAATAGCTCTTTTCTTCAAATGCGGTAACACTT
CATGGTCACATCCAATGGTAATTGTGACAACCACACAGGTTGAGAGCAAAAGGCAGAATATTGAGATTTGAGAGGATCAATTGGATCGTAATCAAGCACT
CTTTCACCTCAAGACATGCGAGATCTTATGAGACTATTCACTTCAATGGAGAACACTTACAACAAGACTTTTTTTTTAAAGGCCACTTACAACAAGACTT
GAGAGTCATAAGTTGATTCGATGGTTGAAACTTGAAAAGAAGGACATAAGAGTTGAAATGATTAGTACATAAGAGTTGAAATAATAAGGAGGTCATGAAT
TTGAATTCTCTTATTAACATAATCTCTCTCTATATAAAACTTACAATATGACTTGAGGTGTTTAATATGTCAACGATGAACCCAAATCCCTCCAACATTG
AGGCAACTCTCTTCCAACCACAATATTTATAGGCTCACTGGTATAGACTTATTTTTGGAAGAAGG