Detailed information on CNT0000639 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000639

Peptides detected in this lncRNA

>peptide 1 (66 aa)
CFSKTKPPKPHSNSDKTKPKSLILAHSDSHHAVTMPVPPRLLHTTRSLPRTPQQINNFINSSQFAG*

Sequence

>CNT0000639
TGTTTTAGCAAAACTAAACCCCCTAAGCCCCACTCTAATTCAGACAAAACTAAACCTAAATCCCTAATTTTGGCGCACTCTGACAGCCACCACGCAGTCA
CCATGCCGGTGCCGCCACGGCTCCTCCACACGACTCGCAGTCTCCCTCGCACTCCCCAACAAATAAATAACTTCATAAACTCATCTCAATTTGCTGGTTG
AAACATAGAAAACAAGTCAAGCATAGCAGGAACAACAAGCAGGCACGCCTTATATTCTCTACATAAATAGCTTTTTCAATAAAACAAACCTTCTGTTGAG
TTTCTATTGTGACGCCCATTTGCTCAATTTGATCTGACATAGCCTAAACAGAAGAAAAACATGCATCAATTAAAGGCCTTGAAAAAGTGATTTTAACAAC
CAGATCATGTCTCCAGCGTGATCTTTTCTTATTCAATGTTTTTATAAAAAAGAAATATATATGGATTGCTGAACTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G35510.1 Uncharacterized protein protein coding CNT0000639 490 209 CDS Trans
GLYMA19G38150.1 Uncharacterized protein protein coding CNT0000639 394 170 CDS Trans