Detailed information on CNT0000644 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000644

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.2481.3651.76700.2161.3580.7440.8970.6672.2210.581.4780.63800.126leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEHRVDFSCFRQFQFVGHNANAIYYLEGSIESFCEFTRSYLRPFG*

>peptide 2 (64 aa)
MHTLASPETHRWLFPLNEMTSVFQGDMQGEQKVLVTSSCDHSIVCGGRVLLGNDWLRRTNTSRE*

>peptide 3 (30 aa)
MSGGEDEAGARPNHLSGIACCASCYRPTFS*

>peptide 4 (48 aa)
MTSSVLKRLVYSNSIWQRFLRSPINIPLSLSVTESNLNFTGRVQVSRL*

Sequence

>CNT0000644
ATCTATTGTTACAGATAAAAAAACAATTTAAGATTATTTTTAGCTTCTAATTATTTTAAAAAGCTGAAAGAAACATAAAGGAAAGTAAAAATAAATCTGT
CAAAAAAATTGTAACAAACGAAGACTCCATAGCCAACTGCTTCAGCTACGTTTGCAATTTGGCGATGACATCATCCGTTCTGAAACGCCTCGTCTATTCC
AATTCCATTTGGCAACGCTTCTTAAGGTCACCAATCAACATCCCTCTTTCTCTCTCTGTTACTGAATCGAATTTAAACTTCACAGGGAGGGTTCAAGTTT
CTCGACTTTGATGCACACGCTTGCTTCTCCAGAAACTCACAGGTGGTTGTTTCCCCTTAATGAAATGACTTCAGTATTTCAAGGTGATATGCAAGGGGAG
CAAAAGGTTTTAGTTACCTCCAGCTGCGATCACTCCATTGTCTGTGGTGGAAGGGTCTTGTTAGGGAATGACTGGCTTAGGAGGACCAACACCTCCAGAG
AATAAGGAGAATTAGAGAAGAACAGAGTCAGAGGAATTTCCAGCTTTTTCATATCTCTGCTTTTGTTATTTACAGGAAGCATCAAGCAAGAAGATTTGAA
GATGAGCTGGCAATTCCATTTCCTTTGTCGCTATCCTCAGACGAAGTCATTCAAGTAAGTGAGCTTCTTGATCCTTCGTTTGGGCTTTGCTTCTTTTGGC
ACCACCTCATTTGCGAATTCCTTCTCTGTTGTTGCTATGTCGTTACTGTCCTCTTGTGCTTGAGCTTCTGTGTTCGTATCACTCTTCGGCCCTTGTAAGA
TCACCTTGTCCTCAAGGTGATAATCTTGTTGTAACTGCGTCCAATCTTTCCAAGAGGTCTCATCGGGAGAGAGACCTTGCCACTAAACCAGCACCTCCCA
AGCTCCTTCTTCTGAAGCTTTACGAAAATCCAAGATAGCCAAAGGGTACACCAGCGGTTGATCGTTGAGAAATGTTGATGGCAACTTCAGTTCTGTTTGC
TGCTCTGGAATTCCTCGAAAAGGTTTAAGTTTAGAGCAATGGAACACAGGGTGGATTTTAGCTGTTTCCGGCAATTTCAGTTTGTAGGCCATAATGCCAA
TGCGATCTATTACCTGGAAGGGTCCATAGAATCGTTTTGCGAGTTTACCAGAAGCTATTTGAGGCCCTTTGGCTGATGTCTGGTGGAGAGGACGAAGCCG
GAGCAAGACCCAATCACCTATCTGGTATTGCCTGTTGCGCCTCTTGCTATCGGCCTACTTTTTCATAGCTTCCTGTGCTTTAAGAAGCTTTTTGCGAATC
GTTTGGAAAG